Variant report

Variant	rs56391048
Chromosome Location	chr7:64336153-64336154
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:64336120-64336170	MCF-7	breast:	n/a
2	chr7:64336120-64336170	HepG2	liver:	n/a
3	chr7:64336120-64336170	ovcar-3	ovarian:	n/a
4	chr7:64336120-64336170	SK-N-SH	brain:	n/a
5	chr7:64336120-64336170	NHBE	bronchial:	n/a
6	chr7:64336120-64336170	Hepatocyte	liver:	n/a
7	chr7:64336120-64336170	NB4	blood:	n/a
8	chr7:64336120-64336170	AG10803	skin:	n/a
9	chr7:64336120-64336170	AG09319	gingival:	n/a
10	chr7:64336120-64336170	NT2-D1	testis:	n/a
11	chr7:64336120-64336170	SK-N-MC	brain:	n/a
12	chr7:64336120-64336170	HL-60	blood:	n/a
13	chr7:64336120-64336170	PrEC	prostate:	n/a
14	chr7:64336120-64336170	A549	lung:	n/a
15	chr7:64336120-64336170	GM12891	blood:	n/a
16	chr7:64336120-64336170	PANC-1	pancreas:	n/a
17	chr7:64336120-64336170	Jurkat	blood:	n/a
18	chr7:64336120-64336170	HAEpiC	amniotic membrane:	n/a
19	chr7:64336120-64336170	HEEpiC	esophagus:	n/a
20	chr7:64336120-64336170	HPAEpiC	pulmonary alveolar:	n/a
21	chr7:64336120-64336170	BE2_C	brain:	n/a
22	chr7:64336120-64336170	U87	brain:	n/a
23	chr7:64336120-64336170	HEK293	kidney:	embryo
24	chr7:64336120-64336170	K562	blood:	n/a
25	chr7:64336120-64336170	HCM	heart:	n/a
26	chr7:64336120-64336170	PFSK-1	brain:	n/a
27	chr7:64336120-64336170	AG09309	skin:	n/a
28	chr7:64336120-64336170	GM06990	blood:	n/a
29	chr7:64336120-64336170	H1-hESC	embryonic stem cell:	embryo
30	chr7:64336120-64336170	NH-A	brain:	n/a
31	chr7:64336120-64336170	ECC-1	luminal epithelium:	n/a
32	chr7:64336120-64336170	T-47D	breast:	n/a
33	chr7:64336120-64336170	NHDF-neo	bronchial:	n/a
34	chr7:64336120-64336170	HIPEpiC	eye:	n/a
35	chr7:64336120-64336170	CMK	blood:	n/a
36	chr7:64336120-64336170	Hela-S3	cervix:	n/a
37	chr7:64336120-64336170	MCF10A-Er-Src	breast:	n/a
38	chr7:64336120-64336170	SAEC	small airway:	n/a
39	chr7:64336120-64336170	IMR90	lung:	fetal
40	chr7:64336120-64336170	HCF	heart:	n/a
41	chr7:64336120-64336170	BJ	skin:	n/a
42	chr7:64336120-64336170	AG04450	lung:	fetal
43	chr7:64336120-64336170	ProgFib	skin:	n/a
44	chr7:64336120-64336170	GM12892	blood:	n/a
45	chr7:64336120-64336170	RPTEC	kidney:	n/a
46	chr7:64336120-64336170	HRE	kidney:	n/a
47	chr7:64336120-64336170	HRCEpiC	kidney:	n/a
48	chr7:64336120-64336170	HCT-116	colon:	n/a
49	chr7:64336120-64336170	HMEC	breast:	n/a
50	chr7:64336120-64336170	GM19239	blood:	n/a

No data

Variant related genes	Relation type
ZNF273	CpG island

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10225171	0.85[ASN][1000 genomes]
rs10240146	0.94[ASN][1000 genomes]
rs10279535	0.86[ASN][1000 genomes]
rs11760727	0.85[ASN][1000 genomes]
rs11773349	0.83[ASN][1000 genomes]
rs1464927	0.85[ASN][1000 genomes]
rs1464928	0.85[ASN][1000 genomes]
rs1525809	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1880656	0.85[ASN][1000 genomes]
rs3763506	0.85[ASN][1000 genomes]
rs4273744	0.92[ASN][1000 genomes]
rs4392773	0.94[ASN][1000 genomes]
rs4518551	0.85[ASN][1000 genomes]
rs4717220	0.88[ASN][1000 genomes]
rs4718122	0.83[ASN][1000 genomes]
rs4718125	0.87[ASN][1000 genomes]
rs4718131	0.85[ASN][1000 genomes]
rs55683815	0.81[ASN][1000 genomes]
rs55762657	0.82[EUR][1000 genomes]
rs55780785	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55887902	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56004721	0.85[ASN][1000 genomes]
rs56075681	0.85[ASN][1000 genomes]
rs56214350	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56785930	0.94[ASN][1000 genomes]
rs57570718	0.85[ASN][1000 genomes]
rs58676599	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59477017	0.83[ASN][1000 genomes]
rs59666562	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59954648	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60779365	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6460195	0.85[ASN][1000 genomes]
rs67686910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6961445	0.81[ASN][1000 genomes]
rs6976546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6978473	0.81[ASN][1000 genomes]
rs72504855	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73126358	0.83[ASN][1000 genomes]
rs73126387	0.85[ASN][1000 genomes]
rs73130313	0.86[ASN][1000 genomes]
rs73130314	0.86[ASN][1000 genomes]
rs73132347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132368	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73132377	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73137851	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73142749	0.81[ASN][1000 genomes]
rs7782095	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7784902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788090	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7805112	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7808498	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810067	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv1033291	chr7:64273434-64406276	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv508457	chr7:64286522-64391112	Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	esv1797468	chr7:64296309-64356050	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv888282	chr7:64299645-64511564	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	nsv1018967	chr7:64318129-64380869	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	esv21367	chr7:64328624-64345129	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1818246	chr7:64328632-64344038	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1019180	chr7:64329889-64512842	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
20	nsv970860	chr7:64333925-64338698	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64335200-64337000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:64335800-64337400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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