Variant report

Variant	rs73132347
Chromosome Location	chr7:64338138-64338139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr7:64337765-64338173	SK-N-SH_RA	brain:	n/a	n/a
2	POLR2A	chr7:64337614-64338208	H1-neurons	neurons:	n/a	n/a
3	NRF1	chr7:64337566-64338274	SK-N-SH	brain:	n/a	n/a
4	YY1	chr7:64337867-64338202	SK-N-SH_RA	brain:	n/a	n/a
5	MXI1	chr7:64337369-64338620	SK-N-SH	brain:	n/a	n/a
6	SIN3A	chr7:64337818-64338171	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF138-1	chr7:64338038-64338252	NONHSAT121048

Variant related genes	Relation type
ZNF273	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10225171	0.85[ASN][1000 genomes]
rs10240146	0.94[ASN][1000 genomes]
rs10279535	0.86[ASN][1000 genomes]
rs11760727	0.85[ASN][1000 genomes]
rs11773349	0.83[ASN][1000 genomes]
rs1464927	0.85[ASN][1000 genomes]
rs1464928	0.85[ASN][1000 genomes]
rs1525809	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1880656	0.85[ASN][1000 genomes]
rs3763506	0.85[ASN][1000 genomes]
rs4273744	0.92[ASN][1000 genomes]
rs4392773	0.94[ASN][1000 genomes]
rs4518551	0.85[ASN][1000 genomes]
rs4717220	0.88[ASN][1000 genomes]
rs4718122	0.83[ASN][1000 genomes]
rs4718125	0.87[ASN][1000 genomes]
rs4718131	0.85[ASN][1000 genomes]
rs55683815	0.81[ASN][1000 genomes]
rs55762657	0.82[EUR][1000 genomes]
rs55780785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55887902	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56004721	0.85[ASN][1000 genomes]
rs56075681	0.85[ASN][1000 genomes]
rs56214350	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56391048	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56785930	0.94[ASN][1000 genomes]
rs57570718	0.85[ASN][1000 genomes]
rs58676599	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59477017	0.83[ASN][1000 genomes]
rs59666562	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59954648	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60779365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6460195	0.85[ASN][1000 genomes]
rs67686910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6961445	0.81[ASN][1000 genomes]
rs6976546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6978473	0.81[ASN][1000 genomes]
rs72504855	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73126358	0.83[ASN][1000 genomes]
rs73126387	0.85[ASN][1000 genomes]
rs73130313	0.86[ASN][1000 genomes]
rs73130314	0.86[ASN][1000 genomes]
rs73132368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73132377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73137851	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73142749	0.81[ASN][1000 genomes]
rs7782095	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7784902	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788090	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7805112	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7808498	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810067	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv1033291	chr7:64273434-64406276	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv508457	chr7:64286522-64391112	Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	esv1797468	chr7:64296309-64356050	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv888282	chr7:64299645-64511564	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	nsv1018967	chr7:64318129-64380869	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	esv21367	chr7:64328624-64345129	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1818246	chr7:64328632-64344038	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1019180	chr7:64329889-64512842	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
20	nsv970860	chr7:64333925-64338698	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64337200-64338600	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr7:64337400-64338200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr7:64337400-64338400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr7:64337400-64338400	Active TSS	Brain Cingulate Gyrus	brain
5	chr7:64337400-64338400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr7:64337400-64338600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:64337400-64338600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:64337400-64338800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:64337400-64338800	Active TSS	Brain Angular Gyrus	brain
10	chr7:64337600-64338200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr7:64337600-64338200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
12	chr7:64337600-64338200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:64337600-64338200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:64337600-64338200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr7:64337600-64338200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:64337600-64338200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:64337600-64338200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr7:64337600-64338200	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr7:64337600-64338200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr7:64337600-64338200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:64337600-64338200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr7:64337600-64338200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:64337600-64338200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:64337600-64338200	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr7:64337600-64338200	Active TSS	Colonic Mucosa	Colon
26	chr7:64337600-64338200	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr7:64337600-64338200	Flanking Active TSS	Fetal Brain Male	brain
28	chr7:64337600-64338200	Active TSS	Fetal Kidney	kidney
29	chr7:64337600-64338200	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr7:64337600-64338200	Enhancers	Placenta	Placenta
31	chr7:64337600-64338200	ZNF genes & repeats	Gastric	stomach
32	chr7:64337600-64338200	Bivalent/Poised TSS	Left Ventricle	heart
33	chr7:64337600-64338200	Flanking Active TSS	Pancreas	Pancrea
34	chr7:64337600-64338200	Active TSS	Psoas Muscle	Psoas
35	chr7:64337600-64338200	Active TSS	Rectal Mucosa Donor 29	rectum
36	chr7:64337600-64338200	Active TSS	Right Atrium	heart
37	chr7:64337600-64338200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
38	chr7:64337600-64338200	Bivalent/Poised TSS	Osteobl	bone
39	chr7:64337600-64338400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr7:64337600-64338400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:64337600-64338400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
42	chr7:64337600-64338400	Active TSS	Primary T cells from cord blood	blood
43	chr7:64337600-64338400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr7:64337600-64338400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:64337600-64338400	Active TSS	Brain Germinal Matrix	brain
46	chr7:64337600-64338400	Active TSS	Rectal Smooth Muscle	rectum
47	chr7:64337600-64338600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
48	chr7:64337600-64338600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
49	chr7:64337800-64338200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:64337800-64338200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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