Variant report

Variant	rs563912354
Chromosome Location	chr19:39937605-39937606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:39935867..39937651-chr19:40022035..40024212,2	MCF-7	breast:
2	chr10:110600017..110602623-chr19:39936347..39938465,2	MCF-7	breast:
3	chr19:39935872..39937858-chr19:40003816..40005942,2	MCF-7	breast:
4	chr19:39937361..39939355-chr19:39949611..39951111,2	K562	blood:
5	chr19:39936325..39937843-chr19:40029229..40031562,2	MCF-7	breast:
6	chr19:39934676..39937838-chr19:39970025..39973557,7	MCF-7	breast:
7	chr19:39936167..39938828-chr19:39963959..39966821,3	K562	blood:
8	chr19:39934791..39938517-chr19:40022234..40026334,4	K562	blood:
9	chr19:39831465..39834764-chr19:39935836..39937934,3	K562	blood:
10	chr19:39930426..39932115-chr19:39937018..39938757,2	MCF-7	breast:
11	chr19:39935972..39937694-chr19:39965602..39968199,3	K562	blood:
12	chr19:39934619..39937838-chr19:39970480..39972998,6	MCF-7	breast:
13	chr19:39936259..39938651-chr19:39958847..39961509,4	MCF-7	breast:
14	chr19:39903188..39905724-chr19:39934407..39937965,7	MCF-7	breast:
15	chr19:39924469..39929022-chr19:39934307..39938518,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000105197	Chromatin interaction
ENSG00000269246	Chromatin interaction
ENSG00000186838	Chromatin interaction
ENSG00000269792	Chromatin interaction
ENSG00000269584	Chromatin interaction
ENSG00000179134	Chromatin interaction
ENSG00000105193	Chromatin interaction
ENSG00000130755	Chromatin interaction
ENSG00000176401	Chromatin interaction
ENSG00000176396	Chromatin interaction
ENSG00000090924	Chromatin interaction
ENSG00000196235	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870133	chr19:39822160-39938468	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
2	nsv911685	chr19:39888449-39948779	Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	222 gene(s)	inside rSNPs	diseases
3	nsv911689	chr19:39903088-40021759	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv523856	chr19:39913558-39997472	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
6	esv1791966	chr19:39921479-39954931	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
7	nsv544003	chr19:39937078-39974282	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39935200-39937800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:39936400-39938000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
3	chr19:39936400-39938000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:39936600-39937800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr19:39936600-39937800	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr19:39936600-39938000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:39936800-39937800	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr19:39936800-39937800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr19:39936800-39937800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr19:39936800-39937800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr19:39936800-39937800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr19:39936800-39937800	Flanking Active TSS	Dnd41	blood
13	chr19:39936800-39937800	Flanking Active TSS	HMEC	breast
14	chr19:39936800-39938000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr19:39936800-39938000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr19:39936800-39938000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr19:39936800-39938000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr19:39936800-39938600	Enhancers	Spleen	Spleen
19	chr19:39936800-39949200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:39937000-39937800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:39937000-39938000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:39937000-39938000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr19:39937000-39938000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr19:39937000-39938000	Flanking Active TSS	Hela-S3	cervix
25	chr19:39937000-39938200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr19:39937000-39938800	Weak transcription	Aorta	Aorta
27	chr19:39937000-39939000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr19:39937000-39949000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr19:39937000-39971000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr19:39937200-39937800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr19:39937200-39937800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr19:39937200-39937800	Enhancers	Fetal Intestine Large	intestine
33	chr19:39937200-39937800	Enhancers	Placenta	Placenta
34	chr19:39937200-39937800	Enhancers	Left Ventricle	heart
35	chr19:39937200-39937800	Flanking Active TSS	Pancreas	Pancrea
36	chr19:39937200-39937800	Enhancers	Psoas Muscle	Psoas
37	chr19:39937200-39937800	Enhancers	Right Ventricle	heart
38	chr19:39937200-39937800	Flanking Active TSS	HepG2	liver
39	chr19:39937200-39937800	Flanking Active TSS	HSMM	muscle
40	chr19:39937200-39938000	Enhancers	Fetal Heart	heart
41	chr19:39937200-39938000	Flanking Active TSS	GM12878-XiMat	blood
42	chr19:39937200-39938400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr19:39937200-39938400	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr19:39937200-39938600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr19:39937200-39938600	Enhancers	Thymus	Thymus
46	chr19:39937200-39938800	Enhancers	Primary hematopoietic stem cells	blood
47	chr19:39937200-39938800	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr19:39937200-39938800	Weak transcription	Ovary	ovary
49	chr19:39937200-39939200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr19:39937200-39939200	Genic enhancers	Fetal Lung	lung

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