Variant report

Variant	rs56395635
Chromosome Location	chr5:42360387-42360388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10059747	0.91[EUR][1000 genomes]
rs10078935	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10472369	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11738203	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11743641	0.89[EUR][1000 genomes]
rs11744988	0.91[EUR][1000 genomes]
rs11745718	0.94[EUR][1000 genomes]
rs11748224	0.94[EUR][1000 genomes]
rs11748684	0.91[EUR][1000 genomes]
rs28463913	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56937761	0.98[EUR][1000 genomes]
rs57190315	0.87[EUR][1000 genomes]
rs57417495	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58363453	0.91[EUR][1000 genomes]
rs59193921	1.00[EUR][1000 genomes]
rs66484535	0.90[EUR][1000 genomes]
rs66487711	0.98[EUR][1000 genomes]
rs66756362	0.98[EUR][1000 genomes]
rs67526935	0.94[EUR][1000 genomes]
rs67529954	0.98[EUR][1000 genomes]
rs67600650	0.98[EUR][1000 genomes]
rs6887313	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72750886	0.89[EUR][1000 genomes]
rs72750888	0.89[EUR][1000 genomes]
rs72750898	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72750901	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72753015	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72753093	0.83[EUR][1000 genomes]
rs72753097	0.83[EUR][1000 genomes]
rs72753100	0.83[EUR][1000 genomes]
rs72754906	0.83[EUR][1000 genomes]
rs72754916	0.83[EUR][1000 genomes]
rs72754917	0.83[EUR][1000 genomes]
rs7710353	0.85[EUR][1000 genomes]
rs7714376	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7720893	0.85[EUR][1000 genomes]
rs7727915	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv880518	chr5:42231896-42375243	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv881375	chr5:42254097-42442715	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42359800-42360400	Enhancers	H9 Cell Line	embryonic stem cell
2	chr5:42359800-42360600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:42359800-42360600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:42359800-42360600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:42359800-42361400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:42359800-42361600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:42359800-42362000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:42359800-42362200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:42360000-42360400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr5:42360000-42360400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:42360000-42360400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:42360000-42360400	Enhancers	Rectal Smooth Muscle	rectum
13	chr5:42360000-42360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:42360000-42360800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr5:42360000-42360800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:42360000-42361200	Enhancers	Adipose Nuclei	Adipose
17	chr5:42360000-42361400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:42360000-42361800	Enhancers	NHDF-Ad	bronchial
19	chr5:42360000-42362200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr5:42360000-42362400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr5:42360000-42362400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr5:42360200-42360600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:42360200-42361000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:42360200-42361400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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