Variant report
| Variant | rs7720893 |
|---|---|
| Chromosome Location | chr5:42222974-42222975 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10059747 | 0.85[EUR][1000 genomes] |
| rs10078935 | 0.81[EUR][1000 genomes] |
| rs10472369 | 0.81[EUR][1000 genomes] |
| rs11738203 | 0.85[EUR][1000 genomes] |
| rs11744111 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11745718 | 0.80[EUR][1000 genomes] |
| rs11748684 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs28463913 | 0.81[EUR][1000 genomes] |
| rs4626371 | 0.92[EUR][1000 genomes] |
| rs56395635 | 0.85[EUR][1000 genomes] |
| rs56937761 | 0.84[EUR][1000 genomes] |
| rs57190315 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs57417495 | 0.85[EUR][1000 genomes] |
| rs59193921 | 0.85[EUR][1000 genomes] |
| rs632207 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs666581 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6887313 | 0.85[EUR][1000 genomes] |
| rs72748687 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72748699 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72750866 | 0.83[EUR][1000 genomes] |
| rs72750886 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72750888 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72750898 | 0.85[EUR][1000 genomes] |
| rs72750901 | 0.85[EUR][1000 genomes] |
| rs72753015 | 0.81[EUR][1000 genomes] |
| rs7710353 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7714376 | 0.81[EUR][1000 genomes] |
| rs7727915 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933208 | chr5:41879946-42876624 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 112 gene(s) | inside rSNPs | diseases |
| 2 | nsv492147 | chr5:41902086-42896162 | Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 113 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034208 | chr5:42119128-42290759 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:42219400-42228600 | Weak transcription | Adipose Nuclei | Adipose |
| 2 | chr5:42222400-42223200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
