Variant report

Variant	rs666581
Chromosome Location	chr5:42152335-42152336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10044526	0.81[EUR][1000 genomes]
rs10052226	1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs11738449	0.81[EUR][1000 genomes]
rs11742939	0.81[EUR][1000 genomes]
rs11744111	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11748684	0.83[AMR][1000 genomes]
rs13436920	1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs16872061	1.00[CEU][hapmap]
rs16872094	0.81[EUR][1000 genomes]
rs16872097	0.81[EUR][1000 genomes]
rs16872099	0.81[EUR][1000 genomes]
rs16872114	0.81[EUR][1000 genomes]
rs1813615	0.81[EUR][1000 genomes]
rs1813616	0.81[EUR][1000 genomes]
rs2011105	0.81[EUR][1000 genomes]
rs2161581	0.81[EUR][1000 genomes]
rs4626371	1.00[EUR][1000 genomes]
rs57190315	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59778370	0.81[EUR][1000 genomes]
rs632207	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6870241	0.81[EUR][1000 genomes]
rs72748633	0.81[EUR][1000 genomes]
rs72748635	0.81[EUR][1000 genomes]
rs72748636	0.81[EUR][1000 genomes]
rs72748638	0.81[EUR][1000 genomes]
rs72748639	0.81[EUR][1000 genomes]
rs72748641	0.81[EUR][1000 genomes]
rs72748646	0.81[EUR][1000 genomes]
rs72748687	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72748699	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72750886	0.91[AMR][1000 genomes]
rs72750888	0.91[AMR][1000 genomes]
rs7710353	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7720893	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs989747	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1032171	chr5:42015138-42220940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv462125	chr5:42019110-42192620	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv597885	chr5:42019110-42192620	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv969219	chr5:42147728-42169988	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42152200-42152600	Enhancers	Adipose Nuclei	Adipose
2	chr5:42152200-42152800	Enhancers	Fetal Heart	heart

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