Variant report

Variant	rs16872097
Chromosome Location	chr5:42016020-42016021
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10035434	0.88[AMR][1000 genomes]
rs10040757	0.88[AMR][1000 genomes]
rs10043326	0.88[AMR][1000 genomes]
rs10043371	0.88[AMR][1000 genomes]
rs10044526	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045473	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs10052226	1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes]
rs10053522	0.88[AMR][1000 genomes]
rs10054130	0.88[AMR][1000 genomes]
rs10057546	0.88[AMR][1000 genomes]
rs10057587	0.88[AMR][1000 genomes]
rs10057645	0.88[AMR][1000 genomes]
rs10060170	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs10062703	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs10064298	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs10064380	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs10065016	0.88[AMR][1000 genomes]
rs10065335	0.88[AMR][1000 genomes]
rs10075429	0.88[AMR][1000 genomes]
rs10076689	0.88[AMR][1000 genomes]
rs10077481	0.86[GIH][hapmap];0.88[TSI][hapmap]
rs10079651	0.88[AMR][1000 genomes]
rs10472357	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs10472359	0.88[AMR][1000 genomes]
rs10473252	0.88[AMR][1000 genomes]
rs10473255	0.85[AMR][1000 genomes]
rs11738449	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11742939	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11744111	0.81[EUR][1000 genomes]
rs11745460	0.88[AMR][1000 genomes]
rs11745530	0.88[AMR][1000 genomes]
rs11746530	0.88[AMR][1000 genomes]
rs11747648	0.88[AMR][1000 genomes]
rs11748933	0.88[AMR][1000 genomes]
rs13355194	0.88[AMR][1000 genomes]
rs13358459	0.88[AMR][1000 genomes]
rs13360765	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13436920	1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs16872052	0.88[AMR][1000 genomes]
rs16872061	1.00[CEU][hapmap]
rs16872094	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872099	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872100	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16872111	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16872114	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17339188	0.85[AMR][1000 genomes]
rs1813615	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1813616	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011105	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2113053	0.91[EUR][1000 genomes]
rs2161581	1.00[EUR][1000 genomes]
rs2231910	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs28647448	0.88[AMR][1000 genomes]
rs34493032	0.88[AMR][1000 genomes]
rs35890705	0.88[AMR][1000 genomes]
rs4626371	0.81[EUR][1000 genomes]
rs4957182	0.89[EUR][1000 genomes]
rs4957436	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs4957437	0.93[GIH][hapmap];0.88[TSI][hapmap]
rs59778370	1.00[EUR][1000 genomes]
rs666581	0.81[EUR][1000 genomes]
rs6870241	1.00[EUR][1000 genomes]
rs72746985	0.88[AMR][1000 genomes]
rs72746999	0.88[AMR][1000 genomes]
rs72747000	0.88[AMR][1000 genomes]
rs72747002	0.88[AMR][1000 genomes]
rs72748607	0.88[AMR][1000 genomes]
rs72748608	0.88[AMR][1000 genomes]
rs72748609	0.88[AMR][1000 genomes]
rs72748611	0.88[AMR][1000 genomes]
rs72748613	0.88[AMR][1000 genomes]
rs72748614	0.88[AMR][1000 genomes]
rs72748616	0.88[AMR][1000 genomes]
rs72748619	0.88[AMR][1000 genomes]
rs72748623	0.91[EUR][1000 genomes]
rs72748626	0.91[EUR][1000 genomes]
rs72748630	0.98[EUR][1000 genomes]
rs72748631	0.94[EUR][1000 genomes]
rs72748633	1.00[EUR][1000 genomes]
rs72748635	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72748636	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72748638	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72748639	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72748641	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72748645	0.98[EUR][1000 genomes]
rs72748646	1.00[EUR][1000 genomes]
rs72748687	0.81[EUR][1000 genomes]
rs72748699	0.81[EUR][1000 genomes]
rs7341062	0.88[AMR][1000 genomes]
rs7712106	0.88[AMR][1000 genomes]
rs9292828	1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs9292832	0.88[AMR][1000 genomes]
rs9885033	0.88[AMR][1000 genomes]
rs9885117	1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes]
rs989747	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
2	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
3	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
4	nsv880627	chr5:41966551-42087954	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1843569	chr5:42008999-42128184	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1032171	chr5:42015138-42220940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42014400-42016400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:42014800-42016600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:42015200-42016400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:42015200-42016600	Enhancers	HSMM	muscle
5	chr5:42015200-42016600	Enhancers	HSMMtube	muscle
6	chr5:42015400-42016200	Enhancers	NH-A	brain
7	chr5:42015400-42016400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:42015400-42016600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:42015400-42016600	Enhancers	NHDF-Ad	bronchial
10	chr5:42015600-42016400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:42016000-42016200	Enhancers	Liver	Liver

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