Variant report

Variant	rs72748631
Chromosome Location	chr5:42013767-42013768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:42005693..42007368-chr5:42011421..42013927,2	MCF-7	breast:
2	chr5:42011659..42014498-chr5:42016092..42018930,3	K562	blood:
3	chr5:42010842..42015595-chr5:42016092..42019954,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10044526	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11738449	0.94[EUR][1000 genomes]
rs11738956	0.82[AMR][1000 genomes]
rs11742939	0.94[EUR][1000 genomes]
rs13360765	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16872094	0.94[EUR][1000 genomes]
rs16872097	0.94[EUR][1000 genomes]
rs16872099	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16872100	0.90[EUR][1000 genomes]
rs16872111	0.90[EUR][1000 genomes]
rs16872114	0.94[EUR][1000 genomes]
rs1813615	0.94[EUR][1000 genomes]
rs1813616	0.94[EUR][1000 genomes]
rs2011105	0.94[EUR][1000 genomes]
rs2113053	0.86[EUR][1000 genomes]
rs2161581	0.94[EUR][1000 genomes]
rs4957182	0.84[EUR][1000 genomes]
rs59778370	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6870241	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72746930	0.86[AMR][1000 genomes]
rs72746933	0.86[AMR][1000 genomes]
rs72746952	0.86[AMR][1000 genomes]
rs72746962	0.86[AMR][1000 genomes]
rs72746968	0.86[AMR][1000 genomes]
rs72746975	0.86[AMR][1000 genomes]
rs72746995	0.86[AMR][1000 genomes]
rs72747001	0.86[AMR][1000 genomes]
rs72748623	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72748626	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72748630	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72748633	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72748635	0.94[EUR][1000 genomes]
rs72748636	0.94[EUR][1000 genomes]
rs72748638	0.94[EUR][1000 genomes]
rs72748639	0.94[EUR][1000 genomes]
rs72748641	0.94[EUR][1000 genomes]
rs72748645	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72748646	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs989747	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
2	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
3	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
4	nsv880627	chr5:41966551-42087954	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1843569	chr5:42008999-42128184	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42008800-42014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:42013400-42015600	Enhancers	Liver	Liver
3	chr5:42013600-42014000	Enhancers	Pancreatic Islets	Pancreatic Islet

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