Variant report
| Variant | rs72748626 |
|---|---|
| Chromosome Location | chr5:41991569-41991570 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10044526 | 0.91[EUR][1000 genomes] |
| rs11738449 | 0.91[EUR][1000 genomes] |
| rs11742939 | 0.91[EUR][1000 genomes] |
| rs13360765 | 0.94[EUR][1000 genomes] |
| rs16872094 | 0.91[EUR][1000 genomes] |
| rs16872097 | 0.91[EUR][1000 genomes] |
| rs16872099 | 0.91[EUR][1000 genomes] |
| rs16872100 | 0.88[EUR][1000 genomes] |
| rs16872111 | 0.88[EUR][1000 genomes] |
| rs16872114 | 0.91[EUR][1000 genomes] |
| rs1813615 | 0.91[EUR][1000 genomes] |
| rs1813616 | 0.91[EUR][1000 genomes] |
| rs2011105 | 0.91[EUR][1000 genomes] |
| rs2113053 | 0.96[EUR][1000 genomes] |
| rs2161581 | 0.91[EUR][1000 genomes] |
| rs4957182 | 0.98[EUR][1000 genomes] |
| rs59778370 | 0.91[EUR][1000 genomes] |
| rs6870241 | 0.91[EUR][1000 genomes] |
| rs72746926 | 0.89[AMR][1000 genomes] |
| rs72746932 | 0.89[AMR][1000 genomes] |
| rs72746966 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs72746967 | 0.89[AMR][1000 genomes] |
| rs72746974 | 0.89[AMR][1000 genomes] |
| rs72746997 | 0.89[AMR][1000 genomes] |
| rs72748620 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs72748623 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72748630 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72748631 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72748633 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72748635 | 0.91[EUR][1000 genomes] |
| rs72748636 | 0.91[EUR][1000 genomes] |
| rs72748638 | 0.91[EUR][1000 genomes] |
| rs72748639 | 0.91[EUR][1000 genomes] |
| rs72748641 | 0.91[EUR][1000 genomes] |
| rs72748645 | 0.90[EUR][1000 genomes] |
| rs72748646 | 0.91[EUR][1000 genomes] |
| rs989747 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830273 | chr5:41867296-42066070 | Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 111 gene(s) | inside rSNPs | diseases |
| 2 | nsv933208 | chr5:41879946-42876624 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 112 gene(s) | inside rSNPs | diseases |
| 3 | nsv492147 | chr5:41902086-42896162 | Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 113 gene(s) | inside rSNPs | diseases |
| 4 | nsv880627 | chr5:41966551-42087954 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:41990400-41991600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
