Variant report

Variant	rs72748623
Chromosome Location	chr5:41979788-41979789
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41978267..41980483-chr5:41985241..41987652,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10035434	0.83[EUR][1000 genomes]
rs10040757	0.83[EUR][1000 genomes]
rs10043326	0.83[EUR][1000 genomes]
rs10043371	0.83[EUR][1000 genomes]
rs10044526	0.91[EUR][1000 genomes]
rs10045473	0.83[EUR][1000 genomes]
rs10051322	0.83[EUR][1000 genomes]
rs10052226	0.83[EUR][1000 genomes]
rs10053522	0.83[EUR][1000 genomes]
rs10054130	0.83[EUR][1000 genomes]
rs10057546	0.83[EUR][1000 genomes]
rs10057587	0.83[EUR][1000 genomes]
rs10057645	0.83[EUR][1000 genomes]
rs10059424	0.81[EUR][1000 genomes]
rs10060170	0.83[EUR][1000 genomes]
rs10062703	0.83[EUR][1000 genomes]
rs10064298	0.83[EUR][1000 genomes]
rs10065016	0.83[EUR][1000 genomes]
rs10065335	0.83[EUR][1000 genomes]
rs10069638	0.83[EUR][1000 genomes]
rs10070201	0.83[EUR][1000 genomes]
rs10075429	0.83[EUR][1000 genomes]
rs10076689	0.83[EUR][1000 genomes]
rs10079651	0.83[EUR][1000 genomes]
rs10472357	0.83[EUR][1000 genomes]
rs10473252	0.83[EUR][1000 genomes]
rs10473255	0.83[EUR][1000 genomes]
rs11738449	0.91[EUR][1000 genomes]
rs11738956	0.86[AMR][1000 genomes]
rs11742939	0.91[EUR][1000 genomes]
rs11745460	0.83[EUR][1000 genomes]
rs11745530	0.83[EUR][1000 genomes]
rs11746530	0.83[EUR][1000 genomes]
rs11747648	0.83[EUR][1000 genomes]
rs11748933	0.83[EUR][1000 genomes]
rs13355194	0.83[EUR][1000 genomes]
rs13357951	0.83[EUR][1000 genomes]
rs13358459	0.83[EUR][1000 genomes]
rs13360765	0.94[EUR][1000 genomes]
rs1567323	0.83[EUR][1000 genomes]
rs16872052	0.83[EUR][1000 genomes]
rs16872094	0.91[EUR][1000 genomes]
rs16872097	0.91[EUR][1000 genomes]
rs16872099	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16872100	0.88[EUR][1000 genomes]
rs16872111	0.88[EUR][1000 genomes]
rs16872114	0.91[EUR][1000 genomes]
rs17339188	0.83[EUR][1000 genomes]
rs1813615	0.91[EUR][1000 genomes]
rs1813616	0.91[EUR][1000 genomes]
rs2011105	0.91[EUR][1000 genomes]
rs2113053	1.00[EUR][1000 genomes]
rs2161581	0.91[EUR][1000 genomes]
rs2231910	0.83[EUR][1000 genomes]
rs28647448	0.83[EUR][1000 genomes]
rs34493032	0.83[EUR][1000 genomes]
rs35890705	0.83[EUR][1000 genomes]
rs4957178	0.83[EUR][1000 genomes]
rs4957180	0.83[EUR][1000 genomes]
rs4957182	0.94[EUR][1000 genomes]
rs4957436	0.83[EUR][1000 genomes]
rs4957437	0.83[EUR][1000 genomes]
rs4957438	0.83[EUR][1000 genomes]
rs59778370	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6870241	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72746928	0.90[AMR][1000 genomes]
rs72746930	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72746933	0.90[AMR][1000 genomes]
rs72746952	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72746962	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72746968	0.90[AMR][1000 genomes]
rs72746975	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72746985	0.83[EUR][1000 genomes]
rs72746995	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72746999	0.83[EUR][1000 genomes]
rs72747000	0.83[EUR][1000 genomes]
rs72747001	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72747002	0.83[EUR][1000 genomes]
rs72748607	0.83[EUR][1000 genomes]
rs72748608	0.83[EUR][1000 genomes]
rs72748609	0.83[EUR][1000 genomes]
rs72748611	0.83[EUR][1000 genomes]
rs72748613	0.83[EUR][1000 genomes]
rs72748614	0.83[EUR][1000 genomes]
rs72748616	0.83[EUR][1000 genomes]
rs72748619	0.83[EUR][1000 genomes]
rs72748620	0.83[EUR][1000 genomes]
rs72748626	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72748630	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72748631	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72748633	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72748635	0.91[EUR][1000 genomes]
rs72748636	0.91[EUR][1000 genomes]
rs72748638	0.91[EUR][1000 genomes]
rs72748639	0.91[EUR][1000 genomes]
rs72748641	0.91[EUR][1000 genomes]
rs72748645	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72748646	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7341062	0.83[EUR][1000 genomes]
rs7705184	0.86[AFR][1000 genomes]
rs7712106	0.83[EUR][1000 genomes]
rs7723992	0.83[EUR][1000 genomes]
rs9292832	0.83[EUR][1000 genomes]
rs9885033	0.83[EUR][1000 genomes]
rs9885117	0.83[EUR][1000 genomes]
rs989747	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830272	chr5:41833365-41986167	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
2	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
3	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
4	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
5	nsv880627	chr5:41966551-42087954	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41978800-41979800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:41979000-41979800	Enhancers	HSMMtube	muscle
3	chr5:41979400-41979800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:41979600-41980000	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links