Variant report

Variant	rs4957182
Chromosome Location	chr5:41994423-41994424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10044526	0.89[EUR][1000 genomes]
rs10045473	0.92[AMR][1000 genomes]
rs10051322	0.90[AMR][1000 genomes]
rs10059424	0.87[AMR][1000 genomes]
rs10060170	0.92[AMR][1000 genomes]
rs10062703	0.90[AMR][1000 genomes]
rs10064298	0.83[AMR][1000 genomes]
rs10064380	0.92[AMR][1000 genomes]
rs10069638	0.92[AMR][1000 genomes]
rs10070201	0.85[AMR][1000 genomes]
rs10077481	0.89[AMR][1000 genomes]
rs10472357	0.92[AMR][1000 genomes]
rs11738449	0.89[EUR][1000 genomes]
rs11742939	0.89[EUR][1000 genomes]
rs13357951	0.90[AMR][1000 genomes]
rs13360765	0.92[EUR][1000 genomes]
rs1567323	0.85[AMR][1000 genomes]
rs16872094	0.89[EUR][1000 genomes]
rs16872097	0.89[EUR][1000 genomes]
rs16872099	0.89[EUR][1000 genomes]
rs16872100	0.86[EUR][1000 genomes]
rs16872111	0.86[EUR][1000 genomes]
rs16872114	0.89[EUR][1000 genomes]
rs1813615	0.89[EUR][1000 genomes]
rs1813616	0.89[EUR][1000 genomes]
rs2011105	0.89[EUR][1000 genomes]
rs2113053	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2161581	0.89[EUR][1000 genomes]
rs2231910	0.90[AMR][1000 genomes]
rs3863160	0.83[AMR][1000 genomes]
rs4957178	0.92[AMR][1000 genomes]
rs4957180	0.92[AMR][1000 genomes]
rs4957436	0.92[AMR][1000 genomes]
rs4957437	0.90[AMR][1000 genomes]
rs4957438	0.90[AMR][1000 genomes]
rs59778370	0.89[EUR][1000 genomes]
rs6870241	0.89[EUR][1000 genomes]
rs72746983	0.82[AMR][1000 genomes]
rs72746996	0.92[AMR][1000 genomes]
rs72748623	0.94[EUR][1000 genomes]
rs72748626	0.98[EUR][1000 genomes]
rs72748630	0.92[EUR][1000 genomes]
rs72748631	0.84[EUR][1000 genomes]
rs72748633	0.89[EUR][1000 genomes]
rs72748635	0.89[EUR][1000 genomes]
rs72748636	0.89[EUR][1000 genomes]
rs72748638	0.89[EUR][1000 genomes]
rs72748639	0.89[EUR][1000 genomes]
rs72748641	0.89[EUR][1000 genomes]
rs72748645	0.87[EUR][1000 genomes]
rs72748646	0.89[EUR][1000 genomes]
rs989747	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830273	chr5:41867296-42066070	Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
2	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
3	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
4	nsv880627	chr5:41966551-42087954	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41991600-41995000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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