The 2.0 version of rSNPBase

Variant report

Variant rs72746966
Chromosome Location chr5:41838320-41838321
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:41800800-41838600 Weak transcription Fetal Stomach stomach
2 chr5:41801000-41849200 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr5:41801200-41849200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr5:41801200-41849200 Weak transcription Fetal Brain Male brain
5 chr5:41814000-41842200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr5:41816200-41838600 Weak transcription NHEK skin
7 chr5:41818400-41852000 Weak transcription Small Intestine intestine
8 chr5:41819200-41852800 Weak transcription Pancreas Pancrea
9 chr5:41822600-41849200 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr5:41824600-41859400 Weak transcription Spleen Spleen
11 chr5:41825800-41849200 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr5:41827800-41849800 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr5:41828600-41849200 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr5:41828800-41849000 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr5:41829000-41838800 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr5:41829400-41851000 Weak transcription Fetal Intestine Small intestine
17 chr5:41830000-41843400 Strong transcription Primary T helper cells fromperipheralblood blood
18 chr5:41830800-41849200 Weak transcription H1 Cell Line embryonic stem cell
19 chr5:41830800-41849800 Weak transcription Gastric stomach
20 chr5:41831200-41849200 Weak transcription Brain Germinal Matrix brain
21 chr5:41831200-41854400 Weak transcription Colonic Mucosa Colon
22 chr5:41831400-41849200 Weak transcription Placenta Placenta
23 chr5:41831800-41838400 Weak transcription GM12878-XiMat blood
24 chr5:41832200-41849200 Weak transcription Fetal Kidney kidney
25 chr5:41832400-41842400 Weak transcription Fetal Lung lung
26 chr5:41832400-41842600 Weak transcription K562 blood
27 chr5:41832600-41838800 Weak transcription Lung lung
28 chr5:41832800-41838800 Weak transcription Thymus Thymus
29 chr5:41832800-41849200 Weak transcription Primary monocytes fromperipheralblood blood
30 chr5:41832800-41850000 Weak transcription Esophagus oesophagus
31 chr5:41832800-41869200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr5:41833400-41838400 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr5:41833400-41849200 Weak transcription Fetal Muscle Trunk muscle
34 chr5:41833600-41838800 Weak transcription Primary T regulatory cells fromperipheralblood blood
35 chr5:41833800-41839000 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr5:41834000-41849200 Weak transcription Duodenum Mucosa Duodenum
37 chr5:41834200-41839600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr5:41834600-41849200 Weak transcription Primary hematopoietic stem cells blood
39 chr5:41835800-41843200 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr5:41835800-41845600 Strong transcription Dnd41 blood
41 chr5:41836000-41838400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr5:41836000-41857200 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr5:41836200-41838400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr5:41836200-41838400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr5:41836200-41839800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr5:41836200-41839800 Weak transcription HMEC breast
47 chr5:41836200-41849200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr5:41836400-41838400 Weak transcription NH-A brain
49 chr5:41836400-41838600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr5:41836400-41838600 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015