Variant report

Variant	rs583090
Chromosome Location	chr5:41696237-41696238
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41695860..41696457-chr5:41843405..41844187,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083720	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10045473	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10054130	0.87[EUR][1000 genomes]
rs10057645	0.87[EUR][1000 genomes]
rs10059424	0.85[EUR][1000 genomes]
rs10060170	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10062703	0.87[EUR][1000 genomes]
rs10064298	0.87[EUR][1000 genomes]
rs10064380	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10065016	0.87[EUR][1000 genomes]
rs10069638	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10070201	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10076689	0.87[EUR][1000 genomes]
rs10077481	0.83[EUR][1000 genomes]
rs10078011	0.92[EUR][1000 genomes]
rs10079651	0.87[EUR][1000 genomes]
rs1027348	0.92[EUR][1000 genomes]
rs10472357	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10473252	0.87[EUR][1000 genomes]
rs10473255	0.87[EUR][1000 genomes]
rs11738956	0.92[EUR][1000 genomes]
rs11744826	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745460	0.87[EUR][1000 genomes]
rs11745530	0.87[EUR][1000 genomes]
rs11746530	0.87[EUR][1000 genomes]
rs11747648	0.87[EUR][1000 genomes]
rs11747941	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748933	0.87[EUR][1000 genomes]
rs12109887	0.90[EUR][1000 genomes]
rs13355194	0.87[EUR][1000 genomes]
rs13358459	0.87[EUR][1000 genomes]
rs1423242	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423243	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567323	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1582539	0.90[ASN][1000 genomes]
rs167583	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871741	1.00[ASN][1000 genomes]
rs16871793	1.00[ASN][1000 genomes]
rs16871799	1.00[ASN][1000 genomes]
rs16871938	1.00[ASN][1000 genomes]
rs170299	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188818	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs222224	0.90[EUR][1000 genomes]
rs2231910	0.87[EUR][1000 genomes]
rs2453241	0.90[EUR][1000 genomes]
rs2656967	0.82[EUR][1000 genomes]
rs28647448	0.87[EUR][1000 genomes]
rs2910628	1.00[ASN][1000 genomes]
rs316709	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs316710	0.85[EUR][1000 genomes]
rs316711	0.90[EUR][1000 genomes]
rs316712	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316713	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316714	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316715	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316724	1.00[ASN][1000 genomes]
rs316729	0.90[EUR][1000 genomes]
rs316730	1.00[ASN][1000 genomes]
rs316731	0.90[EUR][1000 genomes]
rs316732	0.90[EUR][1000 genomes]
rs316733	0.90[EUR][1000 genomes]
rs316734	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316743	0.90[EUR][1000 genomes]
rs316746	0.90[EUR][1000 genomes]
rs316747	0.90[EUR][1000 genomes]
rs316748	0.90[EUR][1000 genomes]
rs316749	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316750	0.90[EUR][1000 genomes]
rs316751	1.00[ASN][1000 genomes]
rs316752	0.90[EUR][1000 genomes]
rs316754	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316756	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316757	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316758	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957170	1.00[ASN][1000 genomes]
rs4957178	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4957404	1.00[ASN][1000 genomes]
rs4957407	1.00[ASN][1000 genomes]
rs4957418	1.00[ASN][1000 genomes]
rs4957436	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4957437	0.87[EUR][1000 genomes]
rs57944767	0.87[EUR][1000 genomes]
rs582920	0.95[EUR][1000 genomes]
rs584067	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590424	0.82[EUR][1000 genomes]
rs590851	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591384	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602274	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605064	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607620	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608902	1.00[ASN][1000 genomes]
rs609410	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61058110	0.92[EUR][1000 genomes]
rs614952	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614990	0.82[EUR][1000 genomes]
rs620185	0.82[EUR][1000 genomes]
rs620501	0.82[EUR][1000 genomes]
rs621944	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs622413	1.00[ASN][1000 genomes]
rs624097	1.00[ASN][1000 genomes]
rs627476	0.90[EUR][1000 genomes]
rs636461	0.82[EUR][1000 genomes]
rs641270	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654400	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660692	0.82[EUR][1000 genomes]
rs67041756	0.87[EUR][1000 genomes]
rs67152480	0.92[EUR][1000 genomes]
rs675785	0.90[EUR][1000 genomes]
rs675812	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676512	0.82[EUR][1000 genomes]
rs678061	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679399	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679548	0.82[EUR][1000 genomes]
rs6869822	1.00[ASN][1000 genomes]
rs694212	0.82[EUR][1000 genomes]
rs72746919	1.00[ASN][1000 genomes]
rs72746926	0.92[EUR][1000 genomes]
rs72746928	0.92[EUR][1000 genomes]
rs72746930	0.92[EUR][1000 genomes]
rs72746932	0.92[EUR][1000 genomes]
rs72746933	0.90[EUR][1000 genomes]
rs72746952	0.92[EUR][1000 genomes]
rs72746962	0.87[EUR][1000 genomes]
rs72746966	0.92[EUR][1000 genomes]
rs72746968	0.92[EUR][1000 genomes]
rs72746975	0.92[EUR][1000 genomes]
rs72746983	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72746985	0.87[EUR][1000 genomes]
rs72746995	0.87[EUR][1000 genomes]
rs72746996	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72746997	0.83[EUR][1000 genomes]
rs72746999	0.87[EUR][1000 genomes]
rs72747000	0.87[EUR][1000 genomes]
rs72747001	0.87[EUR][1000 genomes]
rs72747002	0.87[EUR][1000 genomes]
rs72758378	0.82[EUR][1000 genomes]
rs72760304	0.82[EUR][1000 genomes]
rs72761834	0.90[EUR][1000 genomes]
rs7706652	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712106	0.87[EUR][1000 genomes]
rs7723992	0.87[EUR][1000 genomes]
rs9292826	0.92[EUR][1000 genomes]
rs9292828	0.92[EUR][1000 genomes]
rs9292832	0.87[EUR][1000 genomes]
rs9885033	0.87[EUR][1000 genomes]
rs9885117	0.87[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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