Variant report

Variant	rs1582539
Chromosome Location	chr5:41707974-41707975
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:41707935..41709217-chr5:41842894..41844288,11	MCF-7	breast:
2	chr5:41707948..41708855-chr5:41843327..41844349,3	MCF-7	breast:
3	chr5:41707271..41710047-chr5:41712912..41714812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083720	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1035486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11744826	0.90[ASN][1000 genomes]
rs11747941	0.90[ASN][1000 genomes]
rs1355089	1.00[AMR][1000 genomes]
rs1423242	0.90[ASN][1000 genomes]
rs1423243	0.90[ASN][1000 genomes]
rs1494392	0.97[AMR][1000 genomes]
rs167583	0.90[ASN][1000 genomes]
rs16871741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16871793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16871799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16871844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871938	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16871940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs170299	0.90[ASN][1000 genomes]
rs17739462	1.00[AMR][1000 genomes]
rs17847285	1.00[AMR][1000 genomes]
rs1833818	0.94[AMR][1000 genomes]
rs188818	0.90[ASN][1000 genomes]
rs2329815	1.00[AMR][1000 genomes]
rs2910628	0.90[ASN][1000 genomes]
rs316712	0.90[ASN][1000 genomes]
rs316713	0.90[ASN][1000 genomes]
rs316714	0.90[ASN][1000 genomes]
rs316715	0.90[ASN][1000 genomes]
rs316724	0.90[ASN][1000 genomes]
rs316730	0.90[ASN][1000 genomes]
rs316734	0.90[ASN][1000 genomes]
rs316749	0.90[ASN][1000 genomes]
rs316751	0.90[ASN][1000 genomes]
rs316754	0.90[ASN][1000 genomes]
rs316756	0.90[ASN][1000 genomes]
rs316757	0.90[ASN][1000 genomes]
rs316758	0.90[ASN][1000 genomes]
rs4245982	0.91[AMR][1000 genomes]
rs4957160	0.97[AMR][1000 genomes]
rs4957161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4957171	1.00[AMR][1000 genomes]
rs4957172	1.00[AMR][1000 genomes]
rs4957173	1.00[AMR][1000 genomes]
rs4957174	1.00[AMR][1000 genomes]
rs4957175	0.91[AMR][1000 genomes]
rs4957176	0.94[AMR][1000 genomes]
rs4957177	0.88[AMR][1000 genomes]
rs4957403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4957407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4957409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4957419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957425	1.00[AMR][1000 genomes]
rs4957428	1.00[AMR][1000 genomes]
rs4957429	1.00[AMR][1000 genomes]
rs4957431	1.00[AMR][1000 genomes]
rs4957432	1.00[AMR][1000 genomes]
rs4957433	0.94[AMR][1000 genomes]
rs4957435	0.88[AMR][1000 genomes]
rs583090	0.90[ASN][1000 genomes]
rs584067	0.90[ASN][1000 genomes]
rs590851	0.90[ASN][1000 genomes]
rs591384	0.90[ASN][1000 genomes]
rs602274	0.90[ASN][1000 genomes]
rs605064	0.90[ASN][1000 genomes]
rs607620	0.90[ASN][1000 genomes]
rs608902	0.90[ASN][1000 genomes]
rs609410	0.90[ASN][1000 genomes]
rs614952	0.90[ASN][1000 genomes]
rs621944	0.90[ASN][1000 genomes]
rs622413	0.90[ASN][1000 genomes]
rs624097	0.90[ASN][1000 genomes]
rs641270	0.90[ASN][1000 genomes]
rs654400	0.90[ASN][1000 genomes]
rs675812	0.90[ASN][1000 genomes]
rs678061	0.90[ASN][1000 genomes]
rs679399	0.90[ASN][1000 genomes]
rs6869822	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72746919	0.90[ASN][1000 genomes]
rs7706652	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3404444	chr5:41701527-41744979	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41707400-41708000	Enhancers	HSMMtube	muscle
2	chr5:41707400-41708800	Enhancers	Osteobl	bone
3	chr5:41707600-41708800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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