Variant report

Variant	rs72746919
Chromosome Location	chr5:41721301-41721302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41713901..41715819-chr5:41720276..41722337,2	K562	blood:

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs10941559	0.96[EUR][1000 genomes]
rs11738517	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11739106	0.97[EUR][1000 genomes]
rs11739257	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11740524	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11740946	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11742249	0.86[EUR][1000 genomes]
rs11744279	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11744516	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11744623	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11744826	1.00[ASN][1000 genomes]
rs11746511	0.97[EUR][1000 genomes]
rs11747881	0.99[EUR][1000 genomes]
rs11747921	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11747941	1.00[ASN][1000 genomes]
rs11749008	0.99[EUR][1000 genomes]
rs11750607	0.88[EUR][1000 genomes]
rs11750760	0.99[EUR][1000 genomes]
rs11750790	0.99[EUR][1000 genomes]
rs13153468	0.99[EUR][1000 genomes]
rs13153837	0.97[EUR][1000 genomes]
rs13155013	0.85[EUR][1000 genomes]
rs13155338	0.87[EUR][1000 genomes]
rs13156367	0.86[EUR][1000 genomes]
rs13162040	0.99[EUR][1000 genomes]
rs13163137	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13164201	0.97[EUR][1000 genomes]
rs13165731	0.96[EUR][1000 genomes]
rs13167578	0.88[EUR][1000 genomes]
rs13168035	0.99[EUR][1000 genomes]
rs13169285	0.94[EUR][1000 genomes]
rs13169977	0.99[EUR][1000 genomes]
rs13170096	0.89[EUR][1000 genomes]
rs13176368	0.99[EUR][1000 genomes]
rs13177937	0.99[EUR][1000 genomes]
rs13179852	0.99[EUR][1000 genomes]
rs13180405	0.89[EUR][1000 genomes]
rs13180475	0.87[EUR][1000 genomes]
rs13182336	0.99[EUR][1000 genomes]
rs13185973	0.99[EUR][1000 genomes]
rs13186086	0.87[EUR][1000 genomes]
rs13189403	0.96[EUR][1000 genomes]
rs1345781	0.96[EUR][1000 genomes]
rs1389756	0.87[EUR][1000 genomes]
rs1423242	1.00[ASN][1000 genomes]
rs1423243	1.00[ASN][1000 genomes]
rs1508815	0.99[EUR][1000 genomes]
rs1508818	0.88[EUR][1000 genomes]
rs1582539	0.90[ASN][1000 genomes]
rs167583	1.00[ASN][1000 genomes]
rs16871741	1.00[ASN][1000 genomes]
rs16871793	1.00[ASN][1000 genomes]
rs16871799	1.00[ASN][1000 genomes]
rs16871938	1.00[ASN][1000 genomes]
rs16871955	0.99[EUR][1000 genomes]
rs16871972	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16900142	0.96[EUR][1000 genomes]
rs170299	1.00[ASN][1000 genomes]
rs1876653	0.96[EUR][1000 genomes]
rs1876654	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs188818	1.00[ASN][1000 genomes]
rs2081102	0.87[EUR][1000 genomes]
rs2910628	1.00[ASN][1000 genomes]
rs316709	0.85[ASN][1000 genomes]
rs316712	1.00[ASN][1000 genomes]
rs316713	1.00[ASN][1000 genomes]
rs316714	1.00[ASN][1000 genomes]
rs316715	1.00[ASN][1000 genomes]
rs316724	1.00[ASN][1000 genomes]
rs316730	1.00[ASN][1000 genomes]
rs316734	1.00[ASN][1000 genomes]
rs316749	1.00[ASN][1000 genomes]
rs316751	1.00[ASN][1000 genomes]
rs316754	1.00[ASN][1000 genomes]
rs316756	1.00[ASN][1000 genomes]
rs316757	1.00[ASN][1000 genomes]
rs316758	1.00[ASN][1000 genomes]
rs33967331	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34048302	0.94[EUR][1000 genomes]
rs34071445	0.99[EUR][1000 genomes]
rs34193394	0.87[EUR][1000 genomes]
rs34329864	0.99[EUR][1000 genomes]
rs34339137	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34369972	0.99[EUR][1000 genomes]
rs34412181	0.99[EUR][1000 genomes]
rs34500930	0.99[EUR][1000 genomes]
rs34569700	0.99[EUR][1000 genomes]
rs34625465	0.99[EUR][1000 genomes]
rs34663371	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34841703	0.99[EUR][1000 genomes]
rs34873414	0.99[EUR][1000 genomes]
rs34898214	0.87[EUR][1000 genomes]
rs35077044	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35244816	0.85[EUR][1000 genomes]
rs35252930	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35343042	0.97[EUR][1000 genomes]
rs35613904	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35691805	0.87[EUR][1000 genomes]
rs35748945	0.88[EUR][1000 genomes]
rs35764180	1.00[EUR][1000 genomes]
rs35861205	0.99[EUR][1000 genomes]
rs36005620	0.99[EUR][1000 genomes]
rs36009913	0.86[EUR][1000 genomes]
rs36113900	0.99[EUR][1000 genomes]
rs3926618	0.96[EUR][1000 genomes]
rs4957170	1.00[ASN][1000 genomes]
rs4957404	1.00[ASN][1000 genomes]
rs4957407	1.00[ASN][1000 genomes]
rs4957418	1.00[ASN][1000 genomes]
rs4957430	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55817686	1.00[EUR][1000 genomes]
rs56017638	0.99[EUR][1000 genomes]
rs583090	1.00[ASN][1000 genomes]
rs584067	1.00[ASN][1000 genomes]
rs590851	1.00[ASN][1000 genomes]
rs591384	1.00[ASN][1000 genomes]
rs60209308	0.99[EUR][1000 genomes]
rs602274	1.00[ASN][1000 genomes]
rs605064	1.00[ASN][1000 genomes]
rs607620	1.00[ASN][1000 genomes]
rs608902	1.00[ASN][1000 genomes]
rs609410	1.00[ASN][1000 genomes]
rs614952	1.00[ASN][1000 genomes]
rs621944	1.00[ASN][1000 genomes]
rs622413	1.00[ASN][1000 genomes]
rs62360521	0.87[EUR][1000 genomes]
rs62360542	0.95[EUR][1000 genomes]
rs624097	1.00[ASN][1000 genomes]
rs641270	1.00[ASN][1000 genomes]
rs654400	1.00[ASN][1000 genomes]
rs66820325	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67114999	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67206815	1.00[EUR][1000 genomes]
rs675812	1.00[ASN][1000 genomes]
rs67715253	1.00[EUR][1000 genomes]
rs678061	1.00[ASN][1000 genomes]
rs67869805	0.94[EUR][1000 genomes]
rs679399	1.00[ASN][1000 genomes]
rs6866549	0.99[EUR][1000 genomes]
rs6869822	1.00[ASN][1000 genomes]
rs6879341	0.99[EUR][1000 genomes]
rs6881206	0.83[EUR][1000 genomes]
rs6881873	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6883144	0.99[EUR][1000 genomes]
rs6888816	0.99[EUR][1000 genomes]
rs6889217	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72746918	1.00[EUR][1000 genomes]
rs72746957	0.99[EUR][1000 genomes]
rs7706652	1.00[ASN][1000 genomes]
rs7709500	0.99[EUR][1000 genomes]
rs7712911	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7724934	1.00[EUR][1000 genomes]
rs7725264	0.86[EUR][1000 genomes]
rs951883	0.99[EUR][1000 genomes]
rs964267	0.99[EUR][1000 genomes]
rs9687619	0.96[EUR][1000 genomes]
rs9763018	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3404444	chr5:41701527-41744979	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv3326078	chr5:41710992-41743453	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41721000-41722000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:41721200-41722200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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