Variant report

Variant	rs13189403
Chromosome Location	chr5:41683820-41683821
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10941559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11738517	0.89[EUR][1000 genomes]
rs11739106	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11739257	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11740524	0.92[EUR][1000 genomes]
rs11740946	0.95[EUR][1000 genomes]
rs11744279	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11744516	0.95[EUR][1000 genomes]
rs11744623	0.92[EUR][1000 genomes]
rs11746511	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11747881	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11747921	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11749008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11750607	0.84[EUR][1000 genomes]
rs11750760	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11750790	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13153468	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13153837	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13155013	0.82[EUR][1000 genomes]
rs13155338	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13162040	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13163137	0.95[EUR][1000 genomes]
rs13164201	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13165731	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13167578	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13168035	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13169285	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13169977	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13170096	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13176368	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13177937	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13179852	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13180405	0.89[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13180475	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13182336	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13185973	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13186086	0.89[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1345781	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1389756	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1508815	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1508818	0.84[EUR][1000 genomes]
rs16871955	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16871972	0.94[EUR][1000 genomes]
rs16900142	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1876653	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1876654	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2081102	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs33967331	0.95[EUR][1000 genomes]
rs34048302	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34071445	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34193394	0.90[EUR][1000 genomes]
rs34329864	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34339137	0.95[EUR][1000 genomes]
rs34369972	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34412181	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34500930	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34569700	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34625465	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34663371	0.95[EUR][1000 genomes]
rs34841703	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34873414	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34898214	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35077044	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs35244816	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35252930	0.95[EUR][1000 genomes]
rs35343042	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35613904	0.92[EUR][1000 genomes]
rs35691805	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35748945	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35764180	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35861205	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36005620	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36009913	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36113900	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3926618	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4957430	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs55817686	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56017638	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60209308	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62360521	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62360542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66820325	0.94[EUR][1000 genomes]
rs67114999	0.95[EUR][1000 genomes]
rs67206815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67715253	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67869805	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6866549	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6879341	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6881873	0.94[EUR][1000 genomes]
rs6883144	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6888816	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6889217	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs72746918	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72746919	0.96[EUR][1000 genomes]
rs72746957	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7709500	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7712911	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7724934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs951883	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs964267	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9687619	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9763018	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13189403	OXCT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41678800-41685400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:41683000-41684200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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