The 2.0 version of rSNPBase

Variant report

Variant rs56017638
Chromosome Location chr5:41770050-41770051
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:41731400-41800400 Weak transcription Small Intestine intestine
2 chr5:41735800-41800400 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr5:41739400-41770800 Weak transcription Pancreas Pancrea
4 chr5:41739400-41788800 Weak transcription Gastric stomach
5 chr5:41739400-41790200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr5:41739400-41799600 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr5:41739600-41786400 Weak transcription Rectal Smooth Muscle rectum
8 chr5:41739600-41794800 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr5:41739800-41770400 Weak transcription Fetal Stomach stomach
10 chr5:41747000-41784000 Weak transcription K562 blood
11 chr5:41747400-41777600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr5:41748200-41776000 Weak transcription HUVEC blood vessel
13 chr5:41749200-41786000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr5:41749200-41797800 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr5:41752000-41789400 Weak transcription Brain Hippocampus Middle brain
16 chr5:41756200-41813800 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr5:41759600-41783400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr5:41759800-41800400 Weak transcription Esophagus oesophagus
19 chr5:41760600-41789400 Weak transcription Stomach Smooth Muscle stomach
20 chr5:41761200-41798400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr5:41761600-41772800 Weak transcription Hela-S3 cervix
22 chr5:41761600-41804600 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr5:41761800-41772800 Weak transcription Primary B cells from peripheral blood blood
24 chr5:41761800-41795000 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr5:41762000-41782800 Weak transcription Fetal Thymus thymus
26 chr5:41762000-41799600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr5:41762200-41775800 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr5:41762200-41794200 Weak transcription Adipose Nuclei Adipose
29 chr5:41762400-41782800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr5:41762400-41794400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr5:41762800-41783600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr5:41762800-41786200 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr5:41763200-41772600 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr5:41763200-41788600 Weak transcription NHLF lung
35 chr5:41763600-41772800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr5:41763600-41783800 Weak transcription HMEC breast
37 chr5:41763800-41776200 Weak transcription NH-A brain
38 chr5:41763800-41788600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr5:41763800-41793200 Weak transcription NHEK skin
40 chr5:41764000-41794600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr5:41764400-41776000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr5:41764400-41776000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr5:41764600-41788600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr5:41764800-41772200 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr5:41765000-41771200 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr5:41765000-41793000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr5:41765000-41793200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr5:41765400-41788400 Weak transcription HSMM muscle
49 chr5:41765600-41786000 Weak transcription Left Ventricle heart
50 chr5:41765600-41786400 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015