The 2.0 version of rSNPBase

Variant report

Variant rs35613904
Chromosome Location chr5:41856614-41856615
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:41824600-41859400 Weak transcription Spleen Spleen
2 chr5:41832800-41869200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr5:41836000-41857200 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr5:41836600-41863800 Weak transcription Muscle Satellite Cultured Cells --
5 chr5:41837200-41858600 Weak transcription H9 Cell Line embryonic stem cell
6 chr5:41841800-41869200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr5:41849000-41857000 Strong transcription Primary hematopoietic stem cells short term culture blood
8 chr5:41849000-41857000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr5:41849000-41857200 Strong transcription Primary T helper cells PMA-I stimulated --
10 chr5:41849000-41857200 Strong transcription K562 blood
11 chr5:41849000-41857800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr5:41849000-41862200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr5:41849000-41862600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr5:41849000-41862800 Strong transcription Primary B cells from peripheral blood blood
15 chr5:41849000-41862800 Strong transcription Fetal Thymus thymus
16 chr5:41849200-41856800 Strong transcription Primary hematopoietic stem cells blood
17 chr5:41849200-41857000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr5:41849200-41859200 Strong transcription Primary T regulatory cells fromperipheralblood blood
19 chr5:41849200-41862000 Strong transcription Dnd41 blood
20 chr5:41849200-41862400 Strong transcription iPS-20b Cell Line embryonic stem cell
21 chr5:41849200-41862800 Strong transcription Primary T cells fromperipheralblood blood
22 chr5:41849200-41863600 Strong transcription Hela-S3 cervix
23 chr5:41849800-41864000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr5:41849800-41869000 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr5:41850200-41856800 Strong transcription GM12878-XiMat blood
26 chr5:41850400-41857000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr5:41850400-41864200 Weak transcription Brain Angular Gyrus brain
28 chr5:41850400-41868800 Weak transcription Fetal Brain Male brain
29 chr5:41850400-41869000 Weak transcription Esophagus oesophagus
30 chr5:41850400-41869000 Weak transcription Fetal Heart heart
31 chr5:41850400-41869000 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr5:41851000-41859000 Weak transcription Primary monocytes fromperipheralblood blood
33 chr5:41851000-41869400 Weak transcription Psoas Muscle Psoas
34 chr5:41851200-41869000 Weak transcription Stomach Mucosa stomach
35 chr5:41851800-41857000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
36 chr5:41852200-41869000 Weak transcription Brain Germinal Matrix brain
37 chr5:41852200-41869000 Weak transcription Gastric stomach
38 chr5:41852200-41869000 Weak transcription Right Ventricle heart
39 chr5:41852200-41869200 Weak transcription Brain Substantia Nigra brain
40 chr5:41852400-41869000 Weak transcription Rectal Smooth Muscle rectum
41 chr5:41852400-41869400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr5:41852800-41861400 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr5:41852800-41864000 Weak transcription Brain Cingulate Gyrus brain
44 chr5:41852800-41868800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr5:41852800-41868800 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr5:41853000-41859000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr5:41853000-41860200 Weak transcription Fetal Lung lung
48 chr5:41853000-41860800 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr5:41853000-41861400 Weak transcription Brain Hippocampus Middle brain
50 chr5:41853000-41869000 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015