The 2.0 version of rSNPBase

Variant report

Variant rs11744516
Chromosome Location chr5:41819531-41819532
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:41778200-41838200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr5:41795400-41835800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr5:41796600-41825800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr5:41796600-41830400 Weak transcription NH-A brain
5 chr5:41796600-41830600 Weak transcription NHDF-Ad bronchial
6 chr5:41796600-41830800 Weak transcription NHLF lung
7 chr5:41800800-41838600 Weak transcription Fetal Stomach stomach
8 chr5:41801000-41835800 Weak transcription Stomach Smooth Muscle stomach
9 chr5:41801000-41849200 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr5:41801200-41849200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr5:41801200-41849200 Weak transcription Fetal Brain Male brain
12 chr5:41804800-41831400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr5:41807400-41822200 Weak transcription Left Ventricle heart
14 chr5:41807400-41826800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr5:41807400-41827400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr5:41807400-41831200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr5:41807400-41831600 Weak transcription Thymus Thymus
18 chr5:41807400-41832000 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr5:41807600-41822600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr5:41807600-41827200 Weak transcription Primary T cells fromperipheralblood blood
21 chr5:41807600-41832000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr5:41808000-41830400 Weak transcription Primary B cells from peripheral blood blood
23 chr5:41808000-41830400 Weak transcription HMEC breast
24 chr5:41808800-41825200 Weak transcription Primary T cells from cord blood blood
25 chr5:41808800-41826800 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr5:41808800-41829000 Weak transcription Hela-S3 cervix
27 chr5:41808800-41831000 Weak transcription Fetal Thymus thymus
28 chr5:41808800-41831400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr5:41809000-41820800 Weak transcription Dnd41 blood
30 chr5:41809000-41823400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:41809000-41825000 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr5:41809000-41830600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr5:41809000-41832000 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr5:41809800-41836200 Weak transcription Right Ventricle heart
35 chr5:41810000-41825000 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr5:41810000-41826800 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr5:41810600-41830600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr5:41813800-41825400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr5:41814000-41842200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr5:41816000-41831200 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr5:41816200-41830400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr5:41816200-41830600 Weak transcription HSMM muscle
43 chr5:41816200-41831800 Weak transcription Ovary ovary
44 chr5:41816200-41838600 Weak transcription NHEK skin
45 chr5:41816400-41831400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr5:41816600-41830400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr5:41816600-41831600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr5:41816800-41831200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr5:41817000-41836000 Weak transcription Aorta Aorta
50 chr5:41818400-41825600 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015