Variant report

Variant	rs13186086
Chromosome Location	chr5:41637293-41637294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40834511..40837225-chr5:41637101..41639681,2	MCF-7	breast:
2	chr5:41636799..41639203-chr5:41639285..41641034,2	K562	blood:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10941559	0.83[EUR][1000 genomes]
rs11739106	0.84[EUR][1000 genomes]
rs11739257	0.84[EUR][1000 genomes]
rs11740524	0.82[EUR][1000 genomes]
rs11740946	0.85[EUR][1000 genomes]
rs11744279	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs11744516	0.85[EUR][1000 genomes]
rs11744623	0.83[EUR][1000 genomes]
rs11746511	0.84[EUR][1000 genomes]
rs11747881	0.88[CEU][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs11747921	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs11749008	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11750760	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs11750790	0.85[EUR][1000 genomes]
rs13153468	0.88[CEU][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs13153837	0.84[EUR][1000 genomes]
rs13155338	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13162040	0.85[EUR][1000 genomes]
rs13163137	0.85[EUR][1000 genomes]
rs13164201	0.84[EUR][1000 genomes]
rs13165731	0.83[EUR][1000 genomes]
rs13168035	0.85[EUR][1000 genomes]
rs13169285	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13169977	0.85[EUR][1000 genomes]
rs13176368	0.85[EUR][1000 genomes]
rs13177937	0.85[EUR][1000 genomes]
rs13179852	0.85[EUR][1000 genomes]
rs13180475	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13182336	0.85[EUR][1000 genomes]
rs13185973	0.88[CEU][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs13189403	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1345781	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1389756	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1508815	0.85[EUR][1000 genomes]
rs16871955	0.85[EUR][1000 genomes]
rs16871972	0.84[EUR][1000 genomes]
rs16900142	0.83[EUR][1000 genomes]
rs1876653	0.83[EUR][1000 genomes]
rs2081102	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs33967331	0.85[EUR][1000 genomes]
rs34048302	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34071445	0.85[EUR][1000 genomes]
rs34193394	1.00[EUR][1000 genomes]
rs34329864	0.85[EUR][1000 genomes]
rs34339137	0.85[EUR][1000 genomes]
rs34369972	0.85[EUR][1000 genomes]
rs34412181	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34500930	0.85[EUR][1000 genomes]
rs34569700	0.85[EUR][1000 genomes]
rs34625465	0.85[EUR][1000 genomes]
rs34663371	0.85[EUR][1000 genomes]
rs34841703	0.85[EUR][1000 genomes]
rs34873414	0.85[EUR][1000 genomes]
rs34898214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35077044	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs35252930	0.85[EUR][1000 genomes]
rs35343042	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35613904	0.83[EUR][1000 genomes]
rs35691805	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35764180	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35861205	0.85[EUR][1000 genomes]
rs36005620	0.85[EUR][1000 genomes]
rs36113900	0.85[EUR][1000 genomes]
rs3926618	0.82[EUR][1000 genomes]
rs4957430	0.84[EUR][1000 genomes]
rs55817686	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56017638	0.85[EUR][1000 genomes]
rs60209308	0.85[EUR][1000 genomes]
rs62360521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360542	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66820325	0.84[EUR][1000 genomes]
rs67114999	0.85[EUR][1000 genomes]
rs67206815	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67715253	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67869805	0.81[EUR][1000 genomes]
rs6866549	0.85[EUR][1000 genomes]
rs6879341	0.85[EUR][1000 genomes]
rs6881873	0.84[EUR][1000 genomes]
rs6883144	0.85[EUR][1000 genomes]
rs6888816	0.85[EUR][1000 genomes]
rs6889217	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs72746918	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72746919	0.87[EUR][1000 genomes]
rs72746957	0.85[EUR][1000 genomes]
rs7709500	0.88[CEU][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs7724934	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs951883	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs964267	0.85[EUR][1000 genomes]
rs9687619	0.83[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41637000-41637600	Weak transcription	Ovary	ovary
2	chr5:41637000-41637800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr5:41637000-41638200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:41637000-41638400	Enhancers	Placenta	Placenta
5	chr5:41637200-41637600	Weak transcription	Liver	Liver

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