The 2.0 version of rSNPBase

Variant report

Variant rs66820325
Chromosome Location chr5:41850769-41850770
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:41818400-41852000 Weak transcription Small Intestine intestine
2 chr5:41819200-41852800 Weak transcription Pancreas Pancrea
3 chr5:41824600-41859400 Weak transcription Spleen Spleen
4 chr5:41829400-41851000 Weak transcription Fetal Intestine Small intestine
5 chr5:41831200-41854400 Weak transcription Colonic Mucosa Colon
6 chr5:41832800-41869200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr5:41836000-41857200 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr5:41836600-41863800 Weak transcription Muscle Satellite Cultured Cells --
9 chr5:41837200-41858600 Weak transcription H9 Cell Line embryonic stem cell
10 chr5:41839000-41851000 Weak transcription Lung lung
11 chr5:41841800-41869200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr5:41843800-41855600 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr5:41849000-41853000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr5:41849000-41853800 Strong transcription NHDF-Ad bronchial
15 chr5:41849000-41855200 Strong transcription HUES64 Cell Line embryonic stem cell
16 chr5:41849000-41856000 Strong transcription Primary T helper naive cells fromperipheralblood blood
17 chr5:41849000-41856200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr5:41849000-41856400 Strong transcription Adipose Nuclei Adipose
19 chr5:41849000-41856600 Strong transcription Primary T helper cells fromperipheralblood blood
20 chr5:41849000-41856600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr5:41849000-41857000 Strong transcription Primary hematopoietic stem cells short term culture blood
22 chr5:41849000-41857000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr5:41849000-41857200 Strong transcription Primary T helper cells PMA-I stimulated --
24 chr5:41849000-41857200 Strong transcription K562 blood
25 chr5:41849000-41857800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr5:41849000-41862200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
27 chr5:41849000-41862600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr5:41849000-41862800 Strong transcription Primary B cells from peripheral blood blood
29 chr5:41849000-41862800 Strong transcription Fetal Thymus thymus
30 chr5:41849200-41851000 Strong transcription Primary monocytes fromperipheralblood blood
31 chr5:41849200-41851000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
32 chr5:41849200-41851000 Strong transcription Psoas Muscle Psoas
33 chr5:41849200-41852200 Strong transcription Brain Germinal Matrix brain
34 chr5:41849200-41852200 Strong transcription Brain Substantia Nigra brain
35 chr5:41849200-41852200 Strong transcription Placenta Placenta
36 chr5:41849200-41852400 Strong transcription Monocytes-CD14+_RO01746 blood
37 chr5:41849200-41852600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr5:41849200-41852800 Strong transcription Primary T killer naive cells fromperipheralblood blood
39 chr5:41849200-41852800 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr5:41849200-41852800 Strong transcription Brain Cingulate Gyrus brain
41 chr5:41849200-41852800 Strong transcription Skeletal Muscle Male skeletal muscle
42 chr5:41849200-41853000 Strong transcription Primary T killer memory cells from peripheral blood blood
43 chr5:41849200-41853000 Strong transcription Brain Inferior Temporal Lobe brain
44 chr5:41849200-41853000 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr5:41849200-41853000 Strong transcription Fetal Adrenal Gland Adrenal Gland
46 chr5:41849200-41853000 Strong transcription Fetal Brain Female brain
47 chr5:41849200-41853000 Strong transcription Fetal Lung lung
48 chr5:41849200-41853000 Strong transcription Fetal Muscle Trunk muscle
49 chr5:41849200-41853000 Strong transcription Fetal Muscle Leg muscle
50 chr5:41849200-41853200 Strong transcription H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015