Variant report

Variant	rs9763018
Chromosome Location	chr5:41814834-41814835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10941559	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11738517	0.85[EUR][1000 genomes]
rs11739106	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11739257	0.88[EUR][1000 genomes]
rs11740524	0.86[EUR][1000 genomes]
rs11740946	0.89[EUR][1000 genomes]
rs11744279	0.89[EUR][1000 genomes]
rs11744516	0.89[EUR][1000 genomes]
rs11744623	0.87[EUR][1000 genomes]
rs11746511	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11747881	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11747921	0.89[EUR][1000 genomes]
rs11749008	0.87[EUR][1000 genomes]
rs11750760	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11750790	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13153468	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13153837	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13155013	0.83[AMR][1000 genomes]
rs13156367	0.81[AMR][1000 genomes]
rs13162040	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13163137	0.89[EUR][1000 genomes]
rs13164201	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13165731	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13167578	0.81[AMR][1000 genomes]
rs13168035	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13169285	0.83[EUR][1000 genomes]
rs13169977	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13170096	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13176368	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13177937	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13179852	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13180405	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13182336	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13185973	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13189403	0.85[EUR][1000 genomes]
rs1345781	0.85[EUR][1000 genomes]
rs1508815	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16871955	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16871972	0.88[EUR][1000 genomes]
rs16900142	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1876653	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1876654	0.85[EUR][1000 genomes]
rs33967331	0.89[EUR][1000 genomes]
rs34048302	0.83[EUR][1000 genomes]
rs34071445	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34329864	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34339137	0.89[EUR][1000 genomes]
rs34369972	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34412181	0.87[EUR][1000 genomes]
rs34500930	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34569700	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34625465	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34663371	0.89[EUR][1000 genomes]
rs34841703	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34873414	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35077044	0.89[EUR][1000 genomes]
rs35244816	0.81[AMR][1000 genomes]
rs35252930	0.89[EUR][1000 genomes]
rs35343042	0.88[EUR][1000 genomes]
rs35613904	0.87[EUR][1000 genomes]
rs35748945	0.85[AMR][1000 genomes]
rs35764180	0.88[EUR][1000 genomes]
rs35861205	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36005620	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36009913	0.85[AMR][1000 genomes]
rs36113900	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3926618	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4957430	0.88[EUR][1000 genomes]
rs55817686	0.88[EUR][1000 genomes]
rs56017638	0.89[EUR][1000 genomes]
rs60209308	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62360542	0.83[EUR][1000 genomes]
rs66820325	0.88[EUR][1000 genomes]
rs67114999	0.89[EUR][1000 genomes]
rs67206815	0.88[EUR][1000 genomes]
rs67715253	0.88[EUR][1000 genomes]
rs67869805	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6866549	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6879341	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6881873	0.88[EUR][1000 genomes]
rs6883144	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6888816	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6889217	0.89[EUR][1000 genomes]
rs72746918	0.88[EUR][1000 genomes]
rs72746919	0.88[EUR][1000 genomes]
rs72746957	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7709500	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7712911	0.84[EUR][1000 genomes]
rs7724934	0.88[EUR][1000 genomes]
rs951883	0.89[EUR][1000 genomes]
rs964267	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9687619	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2762518	chr5:41780210-41935113	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41778200-41838200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:41795400-41816200	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:41795400-41835800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:41796600-41825800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:41796600-41830400	Weak transcription	NH-A	brain
6	chr5:41796600-41830600	Weak transcription	NHDF-Ad	bronchial
7	chr5:41796600-41830800	Weak transcription	NHLF	lung
8	chr5:41797000-41815200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:41797200-41815200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:41800800-41838600	Weak transcription	Fetal Stomach	stomach
11	chr5:41801000-41815800	Weak transcription	Esophagus	oesophagus
12	chr5:41801000-41818000	Weak transcription	Fetal Intestine Large	intestine
13	chr5:41801000-41835800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:41801000-41849200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr5:41801200-41815800	Weak transcription	Osteobl	bone
16	chr5:41801200-41816000	Weak transcription	HSMMtube	muscle
17	chr5:41801200-41817800	Weak transcription	Small Intestine	intestine
18	chr5:41801200-41849200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:41801200-41849200	Weak transcription	Fetal Brain Male	brain
20	chr5:41801400-41815600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:41801800-41815400	Weak transcription	HSMM	muscle
22	chr5:41804800-41831400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:41806800-41816600	Weak transcription	Aorta	Aorta
24	chr5:41807400-41815400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:41807400-41818000	Weak transcription	Primary B cells from cord blood	blood
26	chr5:41807400-41822200	Weak transcription	Left Ventricle	heart
27	chr5:41807400-41826800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:41807400-41827400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:41807400-41831200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:41807400-41831600	Weak transcription	Thymus	Thymus
31	chr5:41807400-41832000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:41807600-41822600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:41807600-41827200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr5:41807600-41832000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:41807800-41815400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:41808000-41830400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:41808000-41830400	Weak transcription	HMEC	breast
38	chr5:41808600-41816200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr5:41808800-41815400	Weak transcription	NHEK	skin
40	chr5:41808800-41815800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:41808800-41825200	Weak transcription	Primary T cells from cord blood	blood
42	chr5:41808800-41826800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr5:41808800-41829000	Weak transcription	Hela-S3	cervix
44	chr5:41808800-41831000	Weak transcription	Fetal Thymus	thymus
45	chr5:41808800-41831400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:41809000-41820800	Weak transcription	Dnd41	blood
47	chr5:41809000-41823400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:41809000-41825000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr5:41809000-41830600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:41809000-41832000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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