Variant report

Variant	rs35343042
Chromosome Location	chr7:32006623-32006624
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10941559	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11738517	0.92[EUR][1000 genomes]
rs11739106	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11739257	0.97[EUR][1000 genomes]
rs11740524	0.95[EUR][1000 genomes]
rs11740946	0.99[EUR][1000 genomes]
rs11742249	0.86[EUR][1000 genomes]
rs11744279	0.99[EUR][1000 genomes]
rs11744516	0.99[EUR][1000 genomes]
rs11744623	0.96[EUR][1000 genomes]
rs11746511	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11747881	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11747921	0.99[EUR][1000 genomes]
rs11749008	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11750607	0.88[EUR][1000 genomes]
rs11750760	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11750790	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13153468	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13153837	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13155013	0.85[EUR][1000 genomes]
rs13155338	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13156367	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13162040	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13163137	0.99[EUR][1000 genomes]
rs13164201	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13165731	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13167578	0.88[EUR][1000 genomes]
rs13168035	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13169285	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13169977	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13170096	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13176368	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13177937	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13179852	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13180405	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13180475	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13182336	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13185973	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13186086	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13189403	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1345781	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1389756	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1508815	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1508818	0.88[EUR][1000 genomes]
rs16871955	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16871972	0.97[EUR][1000 genomes]
rs16900142	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1876653	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1876654	0.94[EUR][1000 genomes]
rs2081102	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs33967331	0.99[EUR][1000 genomes]
rs34048302	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34071445	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34193394	0.84[EUR][1000 genomes]
rs34329864	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34339137	0.99[EUR][1000 genomes]
rs34369972	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34412181	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34500930	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34569700	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34625465	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34663371	0.99[EUR][1000 genomes]
rs34841703	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34873414	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34898214	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35077044	0.99[EUR][1000 genomes]
rs35244816	0.85[EUR][1000 genomes]
rs35252930	0.99[EUR][1000 genomes]
rs35613904	0.96[EUR][1000 genomes]
rs35691805	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35748945	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35764180	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35861205	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36005620	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36009913	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36113900	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3926618	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957430	0.97[EUR][1000 genomes]
rs55817686	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56017638	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60209308	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62360521	0.84[EUR][1000 genomes]
rs62360542	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66820325	0.97[EUR][1000 genomes]
rs67114999	0.99[EUR][1000 genomes]
rs67206815	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67715253	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67869805	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6866549	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6879341	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6881206	0.83[EUR][1000 genomes]
rs6881873	0.97[EUR][1000 genomes]
rs6883144	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6888816	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6889217	0.99[EUR][1000 genomes]
rs72746918	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72746919	0.97[EUR][1000 genomes]
rs72746957	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7709500	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7712911	0.93[EUR][1000 genomes]
rs7724934	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7725264	0.86[EUR][1000 genomes]
rs951883	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs964267	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9687619	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9763018	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869155	chr7:31854796-32417025	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35343042	OXCT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32002400-32010400	Weak transcription	Right Ventricle	heart
2	chr7:32002400-32031000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:32003800-32010400	Weak transcription	Left Ventricle	heart
4	chr7:32004400-32016400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links