Variant report
| Variant | rs7721136 |
|---|---|
| Chromosome Location | chr5:42000952-42000953 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:41925201..41926819-chr5:41999709..42001806,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151876 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10941559 | 0.82[EUR][1000 genomes] |
| rs11739106 | 0.81[EUR][1000 genomes] |
| rs11739257 | 0.81[EUR][1000 genomes] |
| rs11740524 | 0.81[EUR][1000 genomes] |
| rs11742249 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11744623 | 0.82[EUR][1000 genomes] |
| rs11746511 | 0.81[EUR][1000 genomes] |
| rs11750607 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs13153837 | 0.81[EUR][1000 genomes] |
| rs13156367 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13164201 | 0.81[EUR][1000 genomes] |
| rs13167578 | 0.89[EUR][1000 genomes] |
| rs13170096 | 0.88[EUR][1000 genomes] |
| rs13180405 | 0.88[EUR][1000 genomes] |
| rs1508818 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs16871972 | 0.81[EUR][1000 genomes] |
| rs16900142 | 0.82[EUR][1000 genomes] |
| rs1876653 | 0.82[EUR][1000 genomes] |
| rs1876654 | 0.80[EUR][1000 genomes] |
| rs35244816 | 0.88[EUR][1000 genomes] |
| rs35613904 | 0.82[EUR][1000 genomes] |
| rs35748945 | 0.89[EUR][1000 genomes] |
| rs36009913 | 0.87[EUR][1000 genomes] |
| rs4957430 | 0.81[EUR][1000 genomes] |
| rs66820325 | 0.81[EUR][1000 genomes] |
| rs67869805 | 0.81[EUR][1000 genomes] |
| rs6865448 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6881206 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6881873 | 0.81[EUR][1000 genomes] |
| rs7725264 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9687619 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830273 | chr5:41867296-42066070 | Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 111 gene(s) | inside rSNPs | diseases |
| 2 | nsv933208 | chr5:41879946-42876624 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 112 gene(s) | inside rSNPs | diseases |
| 3 | nsv492147 | chr5:41902086-42896162 | Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 113 gene(s) | inside rSNPs | diseases |
| 4 | nsv880627 | chr5:41966551-42087954 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7721136 | OXCT1 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
