Variant report

Variant	rs316754
Chromosome Location	chr5:41674903-41674904
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41674066..41676111-chr5:41688760..41690901,2	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10054130	0.87[EUR][1000 genomes]
rs10059424	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10064298	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10065016	0.87[EUR][1000 genomes]
rs10069638	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10070201	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10076689	0.87[EUR][1000 genomes]
rs10078011	0.92[EUR][1000 genomes]
rs10079651	0.87[EUR][1000 genomes]
rs1027348	0.92[EUR][1000 genomes]
rs10472357	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10473252	0.87[EUR][1000 genomes]
rs11738956	0.92[EUR][1000 genomes]
rs11744826	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745460	0.87[EUR][1000 genomes]
rs11745530	0.87[EUR][1000 genomes]
rs11746530	0.87[EUR][1000 genomes]
rs11747941	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748933	0.87[EUR][1000 genomes]
rs12109887	1.00[EUR][1000 genomes]
rs13355194	0.87[EUR][1000 genomes]
rs13358459	0.87[EUR][1000 genomes]
rs1423242	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423243	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567323	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1582539	0.90[ASN][1000 genomes]
rs167583	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871741	1.00[ASN][1000 genomes]
rs16871793	1.00[ASN][1000 genomes]
rs16871799	1.00[ASN][1000 genomes]
rs16871938	1.00[ASN][1000 genomes]
rs170299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs222224	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453241	1.00[EUR][1000 genomes]
rs2656967	0.92[EUR][1000 genomes]
rs2910628	1.00[ASN][1000 genomes]
rs316709	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs316710	0.95[EUR][1000 genomes]
rs316711	1.00[EUR][1000 genomes]
rs316712	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316713	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316715	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316724	1.00[ASN][1000 genomes]
rs316729	1.00[EUR][1000 genomes]
rs316730	1.00[ASN][1000 genomes]
rs316731	1.00[EUR][1000 genomes]
rs316732	1.00[EUR][1000 genomes]
rs316733	1.00[EUR][1000 genomes]
rs316734	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316743	1.00[EUR][1000 genomes]
rs316746	1.00[EUR][1000 genomes]
rs316747	1.00[EUR][1000 genomes]
rs316748	1.00[EUR][1000 genomes]
rs316749	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316750	1.00[EUR][1000 genomes]
rs316751	1.00[ASN][1000 genomes]
rs316752	1.00[EUR][1000 genomes]
rs316756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957170	1.00[ASN][1000 genomes]
rs4957404	1.00[ASN][1000 genomes]
rs4957407	1.00[ASN][1000 genomes]
rs4957418	1.00[ASN][1000 genomes]
rs57944767	0.87[EUR][1000 genomes]
rs582920	0.95[EUR][1000 genomes]
rs583090	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590424	0.92[EUR][1000 genomes]
rs590851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591384	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605064	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608902	1.00[ASN][1000 genomes]
rs609410	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61058110	0.92[EUR][1000 genomes]
rs614952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614990	0.92[EUR][1000 genomes]
rs620185	0.92[EUR][1000 genomes]
rs620501	0.92[EUR][1000 genomes]
rs621944	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs622413	1.00[ASN][1000 genomes]
rs624097	1.00[ASN][1000 genomes]
rs627476	1.00[EUR][1000 genomes]
rs636461	0.92[EUR][1000 genomes]
rs636905	0.85[EUR][1000 genomes]
rs641270	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660692	0.92[EUR][1000 genomes]
rs67041756	0.97[EUR][1000 genomes]
rs67152480	0.92[EUR][1000 genomes]
rs675785	1.00[EUR][1000 genomes]
rs675812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676512	0.92[EUR][1000 genomes]
rs678061	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679548	0.92[EUR][1000 genomes]
rs6869822	1.00[ASN][1000 genomes]
rs694212	0.92[EUR][1000 genomes]
rs72746919	1.00[ASN][1000 genomes]
rs72746926	0.92[EUR][1000 genomes]
rs72746928	0.92[EUR][1000 genomes]
rs72746930	0.92[EUR][1000 genomes]
rs72746932	0.92[EUR][1000 genomes]
rs72746933	0.90[EUR][1000 genomes]
rs72746952	0.92[EUR][1000 genomes]
rs72746962	0.87[EUR][1000 genomes]
rs72746966	0.92[EUR][1000 genomes]
rs72746968	0.92[EUR][1000 genomes]
rs72746975	0.92[EUR][1000 genomes]
rs72746983	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72746985	0.87[EUR][1000 genomes]
rs72746995	0.87[EUR][1000 genomes]
rs72758378	0.92[EUR][1000 genomes]
rs72760304	0.92[EUR][1000 genomes]
rs72761834	1.00[EUR][1000 genomes]
rs7706652	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723992	0.87[EUR][1000 genomes]
rs9292826	0.92[EUR][1000 genomes]
rs9292828	0.92[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41674000-41675000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:41674800-41675600	Enhancers	Fetal Brain Male	brain

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