Variant report

Variant	rs636905
Chromosome Location	chr5:41577078-41577079
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11744826	0.85[EUR][1000 genomes]
rs11747941	0.85[EUR][1000 genomes]
rs12109887	0.85[EUR][1000 genomes]
rs1423242	0.85[EUR][1000 genomes]
rs1423243	0.85[EUR][1000 genomes]
rs167583	0.85[EUR][1000 genomes]
rs170299	0.85[EUR][1000 genomes]
rs188818	0.85[EUR][1000 genomes]
rs222224	0.85[EUR][1000 genomes]
rs2453241	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2656967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs316710	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs316711	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316712	0.85[EUR][1000 genomes]
rs316713	0.85[EUR][1000 genomes]
rs316714	0.85[EUR][1000 genomes]
rs316715	0.85[EUR][1000 genomes]
rs316729	0.85[EUR][1000 genomes]
rs316731	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316732	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316733	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316734	0.85[EUR][1000 genomes]
rs316743	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316746	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316747	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316748	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316749	0.85[EUR][1000 genomes]
rs316750	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316752	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs316754	0.85[EUR][1000 genomes]
rs316756	0.85[EUR][1000 genomes]
rs316757	0.85[EUR][1000 genomes]
rs316758	0.85[EUR][1000 genomes]
rs582920	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs584067	1.00[CEU][hapmap]
rs590424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs591384	1.00[CEU][hapmap]
rs605064	0.83[EUR][1000 genomes]
rs607620	0.85[EUR][1000 genomes]
rs609410	0.85[EUR][1000 genomes]
rs614952	0.85[EUR][1000 genomes]
rs614990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs620185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs620501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs621944	0.85[EUR][1000 genomes]
rs627476	0.85[EUR][1000 genomes]
rs636461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs641270	0.85[EUR][1000 genomes]
rs654400	0.85[EUR][1000 genomes]
rs660692	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67041756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs675785	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs675812	0.85[EUR][1000 genomes]
rs676512	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs678061	0.80[EUR][1000 genomes]
rs679399	0.85[EUR][1000 genomes]
rs679548	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs694212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758378	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72760304	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72761834	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7706652	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv823058	chr5:41570936-41582473	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv514304	chr5:41571299-41581271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1794449	chr5:41571309-41581513	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2754651	chr5:41571309-41581513	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2755206	chr5:41571309-41581513	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2421732	chr5:41571309-41583279	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2753438	chr5:41571309-41600812	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv441951	chr5:41571313-41581513	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv818348	chr5:41572722-41579718	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41576200-41577800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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