Variant report

Variant	rs675785
Chromosome Location	chr5:41648335-41648336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10054130	0.87[EUR][1000 genomes]
rs10078011	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1027348	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11738956	0.92[EUR][1000 genomes]
rs11744826	1.00[EUR][1000 genomes]
rs11745460	0.87[EUR][1000 genomes]
rs11745530	0.87[EUR][1000 genomes]
rs11746530	0.87[EUR][1000 genomes]
rs11747941	1.00[EUR][1000 genomes]
rs11748933	0.87[EUR][1000 genomes]
rs12109887	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13355194	0.87[EUR][1000 genomes]
rs1423242	1.00[EUR][1000 genomes]
rs1423243	1.00[EUR][1000 genomes]
rs1567323	0.87[EUR][1000 genomes]
rs167583	1.00[EUR][1000 genomes]
rs170299	1.00[EUR][1000 genomes]
rs188818	1.00[EUR][1000 genomes]
rs222224	1.00[EUR][1000 genomes]
rs2453241	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2656967	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs316710	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316711	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316712	1.00[EUR][1000 genomes]
rs316713	1.00[EUR][1000 genomes]
rs316714	1.00[EUR][1000 genomes]
rs316715	1.00[EUR][1000 genomes]
rs316729	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316733	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316734	1.00[EUR][1000 genomes]
rs316743	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316749	1.00[EUR][1000 genomes]
rs316750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316754	1.00[EUR][1000 genomes]
rs316756	1.00[EUR][1000 genomes]
rs316757	1.00[EUR][1000 genomes]
rs316758	1.00[EUR][1000 genomes]
rs57944767	0.87[EUR][1000 genomes]
rs582920	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs583090	0.90[EUR][1000 genomes]
rs584067	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs590424	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs590851	0.92[EUR][1000 genomes]
rs591384	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs602274	0.92[EUR][1000 genomes]
rs605064	0.97[EUR][1000 genomes]
rs607620	1.00[EUR][1000 genomes]
rs609410	1.00[EUR][1000 genomes]
rs61058110	0.92[EUR][1000 genomes]
rs614952	1.00[EUR][1000 genomes]
rs614990	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs620185	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs620501	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs621944	1.00[EUR][1000 genomes]
rs627476	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs636461	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs636905	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs641270	1.00[EUR][1000 genomes]
rs654400	1.00[EUR][1000 genomes]
rs660692	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67041756	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67152480	0.92[EUR][1000 genomes]
rs675609	1.00[CHD][hapmap];0.86[GIH][hapmap]
rs675812	1.00[EUR][1000 genomes]
rs676512	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs678061	0.95[EUR][1000 genomes]
rs679399	1.00[EUR][1000 genomes]
rs679548	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs694212	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72746926	0.92[EUR][1000 genomes]
rs72746928	0.92[EUR][1000 genomes]
rs72746930	0.92[EUR][1000 genomes]
rs72746932	0.92[EUR][1000 genomes]
rs72746933	0.90[EUR][1000 genomes]
rs72746952	0.92[EUR][1000 genomes]
rs72746962	0.87[EUR][1000 genomes]
rs72746966	0.92[EUR][1000 genomes]
rs72746968	0.92[EUR][1000 genomes]
rs72746975	0.92[EUR][1000 genomes]
rs72746983	0.83[EUR][1000 genomes]
rs72746985	0.87[EUR][1000 genomes]
rs72758378	0.92[EUR][1000 genomes]
rs72760304	0.92[EUR][1000 genomes]
rs72761834	1.00[EUR][1000 genomes]
rs7706652	1.00[EUR][1000 genomes]
rs7723992	0.87[EUR][1000 genomes]
rs9292826	0.92[EUR][1000 genomes]
rs9292828	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41646600-41649400	Weak transcription	Ovary	ovary
2	chr5:41647200-41648400	Weak transcription	Aorta	Aorta
3	chr5:41647600-41650600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:41647600-41650600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:41647800-41648800	Weak transcription	NH-A	brain
6	chr5:41648200-41650400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:41648200-41650600	Enhancers	Osteobl	bone

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