Variant report

Variant	rs582920
Chromosome Location	chr5:41708933-41708934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41707935..41709217-chr5:41842894..41844288,11	MCF-7	breast:
2	chr5:41707271..41710047-chr5:41712912..41714812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083720	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10035434	0.92[EUR][1000 genomes]
rs10040757	0.92[EUR][1000 genomes]
rs10043326	0.92[EUR][1000 genomes]
rs10043371	0.92[EUR][1000 genomes]
rs10045473	0.92[EUR][1000 genomes]
rs10051322	0.92[EUR][1000 genomes]
rs10052226	0.92[EUR][1000 genomes]
rs10053522	0.92[EUR][1000 genomes]
rs10054130	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10057546	0.92[EUR][1000 genomes]
rs10057587	0.92[EUR][1000 genomes]
rs10057645	0.92[EUR][1000 genomes]
rs10059424	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10060170	0.92[EUR][1000 genomes]
rs10062703	0.92[EUR][1000 genomes]
rs10064298	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10064380	0.87[EUR][1000 genomes]
rs10065016	0.92[EUR][1000 genomes]
rs10065335	0.92[EUR][1000 genomes]
rs10069638	0.92[EUR][1000 genomes]
rs10070201	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10075429	0.92[EUR][1000 genomes]
rs10076689	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs10077481	0.87[EUR][1000 genomes]
rs10078011	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10079651	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1027348	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10472357	0.92[EUR][1000 genomes]
rs10473252	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10473255	0.92[EUR][1000 genomes]
rs11738956	0.97[EUR][1000 genomes]
rs11744826	0.95[EUR][1000 genomes]
rs11745460	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11745530	0.92[EUR][1000 genomes]
rs11746530	0.92[EUR][1000 genomes]
rs11747648	0.92[EUR][1000 genomes]
rs11747941	0.95[EUR][1000 genomes]
rs11748933	0.92[EUR][1000 genomes]
rs12109887	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13355194	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13357951	0.92[EUR][1000 genomes]
rs13358459	0.92[EUR][1000 genomes]
rs1423242	0.95[EUR][1000 genomes]
rs1423243	0.95[EUR][1000 genomes]
rs1567323	0.92[EUR][1000 genomes]
rs167583	0.95[EUR][1000 genomes]
rs16872052	0.92[EUR][1000 genomes]
rs170299	0.95[EUR][1000 genomes]
rs17339188	0.92[EUR][1000 genomes]
rs188818	0.95[EUR][1000 genomes]
rs222224	0.95[EUR][1000 genomes]
rs2231910	0.92[EUR][1000 genomes]
rs2453241	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2656967	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28647448	0.92[EUR][1000 genomes]
rs316710	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs316711	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316712	0.95[EUR][1000 genomes]
rs316713	0.95[EUR][1000 genomes]
rs316714	0.95[EUR][1000 genomes]
rs316715	0.95[EUR][1000 genomes]
rs316729	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316731	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316732	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316733	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316734	0.95[EUR][1000 genomes]
rs316743	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316746	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316747	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316748	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316749	0.95[EUR][1000 genomes]
rs316750	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316752	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316754	0.95[EUR][1000 genomes]
rs316756	0.95[EUR][1000 genomes]
rs316757	0.95[EUR][1000 genomes]
rs316758	0.95[EUR][1000 genomes]
rs35890705	0.92[EUR][1000 genomes]
rs4957178	0.92[EUR][1000 genomes]
rs4957180	0.92[EUR][1000 genomes]
rs4957434	1.00[CEU][hapmap]
rs4957436	0.92[EUR][1000 genomes]
rs4957437	0.92[EUR][1000 genomes]
rs4957438	0.92[EUR][1000 genomes]
rs57944767	0.92[EUR][1000 genomes]
rs583090	0.95[EUR][1000 genomes]
rs584067	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs590424	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs590851	0.97[EUR][1000 genomes]
rs591384	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs602274	0.97[EUR][1000 genomes]
rs605064	0.92[EUR][1000 genomes]
rs607620	0.95[EUR][1000 genomes]
rs609410	0.95[EUR][1000 genomes]
rs61058110	0.97[EUR][1000 genomes]
rs614952	0.95[EUR][1000 genomes]
rs614990	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs620185	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs620501	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs621944	0.95[EUR][1000 genomes]
rs627476	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs636461	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs636905	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs641270	0.95[EUR][1000 genomes]
rs654400	0.95[EUR][1000 genomes]
rs660692	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67041756	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67152480	0.97[EUR][1000 genomes]
rs675785	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs675812	0.95[EUR][1000 genomes]
rs676512	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs678061	1.00[EUR][1000 genomes]
rs679399	0.95[EUR][1000 genomes]
rs679548	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs694212	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72746926	0.97[EUR][1000 genomes]
rs72746928	0.97[EUR][1000 genomes]
rs72746930	0.97[EUR][1000 genomes]
rs72746932	0.97[EUR][1000 genomes]
rs72746933	0.95[EUR][1000 genomes]
rs72746952	0.97[EUR][1000 genomes]
rs72746962	0.92[EUR][1000 genomes]
rs72746966	0.97[EUR][1000 genomes]
rs72746968	0.97[EUR][1000 genomes]
rs72746975	0.97[EUR][1000 genomes]
rs72746983	0.88[EUR][1000 genomes]
rs72746985	0.92[EUR][1000 genomes]
rs72746995	0.92[EUR][1000 genomes]
rs72746996	0.87[EUR][1000 genomes]
rs72746997	0.87[EUR][1000 genomes]
rs72746999	0.92[EUR][1000 genomes]
rs72747000	0.92[EUR][1000 genomes]
rs72747001	0.92[EUR][1000 genomes]
rs72747002	0.92[EUR][1000 genomes]
rs72748607	0.92[EUR][1000 genomes]
rs72748608	0.92[EUR][1000 genomes]
rs72748609	0.92[EUR][1000 genomes]
rs72748611	0.92[EUR][1000 genomes]
rs72748613	0.92[EUR][1000 genomes]
rs72748614	0.92[EUR][1000 genomes]
rs72748616	0.92[EUR][1000 genomes]
rs72758378	0.87[EUR][1000 genomes]
rs72760304	0.87[EUR][1000 genomes]
rs72761834	0.95[EUR][1000 genomes]
rs7341062	0.92[EUR][1000 genomes]
rs7706652	0.95[EUR][1000 genomes]
rs7712106	0.92[EUR][1000 genomes]
rs7723992	0.92[EUR][1000 genomes]
rs9292826	0.97[EUR][1000 genomes]
rs9292828	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9292832	0.92[EUR][1000 genomes]
rs9885033	0.92[EUR][1000 genomes]
rs9885117	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3404444	chr5:41701527-41744979	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41708400-41709000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:41708400-41709000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:41708600-41709000	Enhancers	HSMM	muscle
4	chr5:41708800-41709000	Enhancers	HSMMtube	muscle

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