Variant report

Variant	rs316746
Chromosome Location	chr5:41683141-41683142
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10054130	0.87[EUR][1000 genomes]
rs10059424	0.85[EUR][1000 genomes]
rs10062703	0.87[EUR][1000 genomes]
rs10064298	0.87[EUR][1000 genomes]
rs10064380	0.83[EUR][1000 genomes]
rs10065016	0.87[EUR][1000 genomes]
rs10069638	0.87[EUR][1000 genomes]
rs10070201	0.87[EUR][1000 genomes]
rs10076689	0.87[EUR][1000 genomes]
rs10077481	0.83[EUR][1000 genomes]
rs10078011	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10079651	0.87[EUR][1000 genomes]
rs1027348	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs10472357	0.87[EUR][1000 genomes]
rs10473252	0.87[EUR][1000 genomes]
rs10473255	0.87[EUR][1000 genomes]
rs11738956	0.92[EUR][1000 genomes]
rs11744826	1.00[EUR][1000 genomes]
rs11745460	0.87[EUR][1000 genomes]
rs11745530	0.87[EUR][1000 genomes]
rs11746530	0.87[EUR][1000 genomes]
rs11747941	1.00[EUR][1000 genomes]
rs11748933	0.87[EUR][1000 genomes]
rs12109887	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13355194	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13358459	0.87[EUR][1000 genomes]
rs1423242	1.00[EUR][1000 genomes]
rs1423243	1.00[EUR][1000 genomes]
rs1567323	0.87[EUR][1000 genomes]
rs167583	1.00[EUR][1000 genomes]
rs170299	1.00[EUR][1000 genomes]
rs188818	1.00[EUR][1000 genomes]
rs222224	1.00[EUR][1000 genomes]
rs2231910	0.87[EUR][1000 genomes]
rs2453241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2656967	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs316710	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316712	1.00[EUR][1000 genomes]
rs316713	1.00[EUR][1000 genomes]
rs316714	1.00[EUR][1000 genomes]
rs316715	1.00[EUR][1000 genomes]
rs316729	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316734	1.00[EUR][1000 genomes]
rs316743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316747	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316748	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316749	1.00[EUR][1000 genomes]
rs316750	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316752	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs316754	1.00[EUR][1000 genomes]
rs316756	1.00[EUR][1000 genomes]
rs316757	1.00[EUR][1000 genomes]
rs316758	1.00[EUR][1000 genomes]
rs4957436	0.87[EUR][1000 genomes]
rs57944767	0.87[EUR][1000 genomes]
rs582920	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs583090	0.90[EUR][1000 genomes]
rs584067	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs590424	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs590851	0.92[EUR][1000 genomes]
rs591384	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs602274	0.92[EUR][1000 genomes]
rs605064	0.97[EUR][1000 genomes]
rs607620	1.00[EUR][1000 genomes]
rs609410	1.00[EUR][1000 genomes]
rs61058110	0.92[EUR][1000 genomes]
rs614952	1.00[EUR][1000 genomes]
rs614990	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs620185	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs620501	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs621944	1.00[EUR][1000 genomes]
rs627476	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs636461	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs636905	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs641270	1.00[EUR][1000 genomes]
rs654400	1.00[EUR][1000 genomes]
rs660692	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67041756	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67152480	0.92[EUR][1000 genomes]
rs675609	1.00[CHD][hapmap];0.86[GIH][hapmap]
rs675785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs675812	1.00[EUR][1000 genomes]
rs676512	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs678061	0.95[EUR][1000 genomes]
rs679399	1.00[EUR][1000 genomes]
rs679548	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs694212	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72746926	0.92[EUR][1000 genomes]
rs72746928	0.92[EUR][1000 genomes]
rs72746930	0.92[EUR][1000 genomes]
rs72746932	0.92[EUR][1000 genomes]
rs72746933	0.90[EUR][1000 genomes]
rs72746952	0.92[EUR][1000 genomes]
rs72746962	0.87[EUR][1000 genomes]
rs72746966	0.92[EUR][1000 genomes]
rs72746968	0.92[EUR][1000 genomes]
rs72746975	0.92[EUR][1000 genomes]
rs72746983	0.83[EUR][1000 genomes]
rs72746985	0.87[EUR][1000 genomes]
rs72746995	0.87[EUR][1000 genomes]
rs72746996	0.83[EUR][1000 genomes]
rs72746997	0.83[EUR][1000 genomes]
rs72758378	0.92[EUR][1000 genomes]
rs72760304	0.92[EUR][1000 genomes]
rs72761834	1.00[EUR][1000 genomes]
rs7706652	1.00[EUR][1000 genomes]
rs7723992	0.87[EUR][1000 genomes]
rs9292826	0.92[EUR][1000 genomes]
rs9292828	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41678800-41685400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:41683000-41683600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:41683000-41684200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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