Variant report

Variant	rs624097
Chromosome Location	chr5:41685344-41685345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1006996	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10075064	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10941557	1.00[CEU][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1118104	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11744826	1.00[ASN][1000 genomes]
rs11745373	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11747941	1.00[ASN][1000 genomes]
rs1175227	0.85[EUR][1000 genomes]
rs13360001	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1423242	1.00[ASN][1000 genomes]
rs1423243	1.00[ASN][1000 genomes]
rs1508816	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1533014	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1582539	0.90[ASN][1000 genomes]
rs167583	1.00[ASN][1000 genomes]
rs16871741	1.00[ASN][1000 genomes]
rs16871793	1.00[ASN][1000 genomes]
rs16871799	1.00[ASN][1000 genomes]
rs16871938	1.00[ASN][1000 genomes]
rs170299	1.00[ASN][1000 genomes]
rs188818	1.00[ASN][1000 genomes]
rs277414	0.85[EUR][1000 genomes]
rs277416	0.85[EUR][1000 genomes]
rs2910628	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316709	0.85[ASN][1000 genomes]
rs316712	1.00[ASN][1000 genomes]
rs316713	1.00[ASN][1000 genomes]
rs316714	1.00[ASN][1000 genomes]
rs316715	1.00[ASN][1000 genomes]
rs316723	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs316724	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316730	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316734	1.00[ASN][1000 genomes]
rs316744	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs316745	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs316749	1.00[ASN][1000 genomes]
rs316751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316754	1.00[ASN][1000 genomes]
rs316756	1.00[ASN][1000 genomes]
rs316757	1.00[ASN][1000 genomes]
rs316758	1.00[ASN][1000 genomes]
rs316760	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34602857	0.81[EUR][1000 genomes]
rs35077044	0.81[MEX][hapmap]
rs35154057	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35795768	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4050986	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4289604	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4324728	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4957170	1.00[ASN][1000 genomes]
rs4957404	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4957407	1.00[ASN][1000 genomes]
rs4957418	1.00[ASN][1000 genomes]
rs4957424	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4957430	0.81[MEX][hapmap];0.81[TSI][hapmap]
rs583090	1.00[ASN][1000 genomes]
rs584067	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs590851	1.00[ASN][1000 genomes]
rs591384	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs602274	1.00[ASN][1000 genomes]
rs605064	1.00[ASN][1000 genomes]
rs607620	1.00[ASN][1000 genomes]
rs608902	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609410	1.00[ASN][1000 genomes]
rs614952	1.00[ASN][1000 genomes]
rs621944	1.00[ASN][1000 genomes]
rs622413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641270	1.00[ASN][1000 genomes]
rs6451581	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6451582	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs654400	1.00[ASN][1000 genomes]
rs675812	1.00[ASN][1000 genomes]
rs678061	1.00[ASN][1000 genomes]
rs679399	1.00[ASN][1000 genomes]
rs6869822	1.00[ASN][1000 genomes]
rs72746919	1.00[ASN][1000 genomes]
rs7706652	1.00[ASN][1000 genomes]
rs7728482	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7729014	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7733096	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9292825	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs624097	C5orf39	cis	cerebellum	SCAN
rs624097	LIFR	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41678800-41685400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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