Variant report

Variant	rs34602857
Chromosome Location	chr5:41773730-41773731
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10075064	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10941557	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13360001	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1533014	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs316724	0.82[EUR][1000 genomes]
rs316760	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35154057	0.83[AMR][1000 genomes]
rs4050986	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4957424	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs622413	0.81[EUR][1000 genomes]
rs624097	0.81[EUR][1000 genomes]
rs6451581	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7729014	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7733096	0.82[AMR][1000 genomes]
rs9292825	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41731400-41800400	Weak transcription	Small Intestine	intestine
2	chr5:41735800-41800400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:41739400-41788800	Weak transcription	Gastric	stomach
4	chr5:41739400-41790200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:41739400-41799600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:41739600-41786400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:41739600-41794800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:41747000-41784000	Weak transcription	K562	blood
9	chr5:41747400-41777600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:41748200-41776000	Weak transcription	HUVEC	blood vessel
11	chr5:41749200-41786000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:41749200-41797800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr5:41752000-41789400	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:41756200-41813800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:41759600-41783400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:41759800-41800400	Weak transcription	Esophagus	oesophagus
17	chr5:41760600-41789400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:41761200-41798400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:41761600-41804600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr5:41761800-41795000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:41762000-41782800	Weak transcription	Fetal Thymus	thymus
22	chr5:41762000-41799600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:41762200-41775800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:41762200-41794200	Weak transcription	Adipose Nuclei	Adipose
25	chr5:41762400-41782800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:41762400-41794400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:41762800-41783600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:41762800-41786200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:41763200-41788600	Weak transcription	NHLF	lung
30	chr5:41763600-41783800	Weak transcription	HMEC	breast
31	chr5:41763800-41776200	Weak transcription	NH-A	brain
32	chr5:41763800-41788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:41763800-41793200	Weak transcription	NHEK	skin
34	chr5:41764000-41794600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:41764400-41776000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:41764400-41776000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr5:41764600-41788600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:41765000-41793000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:41765000-41793200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:41765400-41788400	Weak transcription	HSMM	muscle
41	chr5:41765600-41786000	Weak transcription	Left Ventricle	heart
42	chr5:41765600-41786400	Weak transcription	HSMMtube	muscle
43	chr5:41766400-41782400	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr5:41768800-41775200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr5:41768800-41782800	Weak transcription	Primary B cells from cord blood	blood
46	chr5:41768800-41791000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr5:41769200-41775600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr5:41769200-41775600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr5:41769400-41781400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr5:41770000-41794600	Weak transcription	Thymus	Thymus

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