Variant report

Variant	rs16871741
Chromosome Location	chr5:41638262-41638263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40834511..40837225-chr5:41637101..41639681,2	MCF-7	breast:
2	chr5:41636799..41639203-chr5:41639285..41641034,2	K562	blood:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1035486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11744826	1.00[ASN][1000 genomes]
rs11747941	1.00[ASN][1000 genomes]
rs1355089	1.00[AMR][1000 genomes]
rs1423242	1.00[ASN][1000 genomes]
rs1423243	1.00[ASN][1000 genomes]
rs1494392	0.97[AMR][1000 genomes]
rs1582539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs167583	1.00[ASN][1000 genomes]
rs16871793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16871799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16871844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871938	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16871940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs170299	1.00[ASN][1000 genomes]
rs17739462	1.00[AMR][1000 genomes]
rs17847285	1.00[AMR][1000 genomes]
rs1833818	0.94[AMR][1000 genomes]
rs188818	1.00[ASN][1000 genomes]
rs2329815	1.00[AMR][1000 genomes]
rs2910628	1.00[ASN][1000 genomes]
rs316709	0.85[ASN][1000 genomes]
rs316712	1.00[ASN][1000 genomes]
rs316713	1.00[ASN][1000 genomes]
rs316714	1.00[ASN][1000 genomes]
rs316715	1.00[ASN][1000 genomes]
rs316724	1.00[ASN][1000 genomes]
rs316730	1.00[ASN][1000 genomes]
rs316734	1.00[ASN][1000 genomes]
rs316749	1.00[ASN][1000 genomes]
rs316751	1.00[ASN][1000 genomes]
rs316754	1.00[ASN][1000 genomes]
rs316756	1.00[ASN][1000 genomes]
rs316757	1.00[ASN][1000 genomes]
rs316758	1.00[ASN][1000 genomes]
rs4245982	0.91[AMR][1000 genomes]
rs4957160	0.97[AMR][1000 genomes]
rs4957161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4957403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4957407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4957409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4957419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957425	1.00[AMR][1000 genomes]
rs4957428	1.00[AMR][1000 genomes]
rs4957429	1.00[AMR][1000 genomes]
rs583090	1.00[ASN][1000 genomes]
rs584067	1.00[ASN][1000 genomes]
rs590851	1.00[ASN][1000 genomes]
rs591384	1.00[ASN][1000 genomes]
rs602274	1.00[ASN][1000 genomes]
rs605064	1.00[ASN][1000 genomes]
rs607620	1.00[ASN][1000 genomes]
rs608902	1.00[ASN][1000 genomes]
rs609410	1.00[ASN][1000 genomes]
rs614952	1.00[ASN][1000 genomes]
rs621944	1.00[ASN][1000 genomes]
rs622413	1.00[ASN][1000 genomes]
rs624097	1.00[ASN][1000 genomes]
rs641270	1.00[ASN][1000 genomes]
rs654400	1.00[ASN][1000 genomes]
rs675812	1.00[ASN][1000 genomes]
rs678061	1.00[ASN][1000 genomes]
rs679399	1.00[ASN][1000 genomes]
rs6869822	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72746919	1.00[ASN][1000 genomes]
rs7706652	1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41637000-41638400	Enhancers	Placenta	Placenta
2	chr5:41637600-41641200	Enhancers	HepG2	liver
3	chr5:41637600-41641400	Enhancers	Liver	Liver

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