Variant report

Variant	rs1035486
Chromosome Location	chr5:41723422-41723423
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1355089	1.00[AMR][1000 genomes]
rs1494392	0.97[AMR][1000 genomes]
rs1582539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16871938	1.00[AMR][1000 genomes]
rs16871940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17739462	1.00[AMR][1000 genomes]
rs17847285	1.00[AMR][1000 genomes]
rs1833818	0.94[AMR][1000 genomes]
rs2329815	1.00[AMR][1000 genomes]
rs4245982	0.91[AMR][1000 genomes]
rs4957160	0.97[AMR][1000 genomes]
rs4957161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957171	1.00[AMR][1000 genomes]
rs4957172	1.00[AMR][1000 genomes]
rs4957173	1.00[AMR][1000 genomes]
rs4957174	1.00[AMR][1000 genomes]
rs4957175	0.91[AMR][1000 genomes]
rs4957176	0.94[AMR][1000 genomes]
rs4957177	0.88[AMR][1000 genomes]
rs4957403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4957418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4957425	1.00[AMR][1000 genomes]
rs4957428	1.00[AMR][1000 genomes]
rs4957429	1.00[AMR][1000 genomes]
rs4957431	1.00[AMR][1000 genomes]
rs4957432	1.00[AMR][1000 genomes]
rs4957433	0.94[AMR][1000 genomes]
rs4957435	0.88[AMR][1000 genomes]
rs4957439	0.88[AMR][1000 genomes]
rs6869822	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3404444	chr5:41701527-41744979	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv3326078	chr5:41710992-41743453	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv830271	chr5:41716527-41895710	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41722000-41736800	Weak transcription	HSMMtube	muscle
2	chr5:41723000-41724800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:41723000-41735800	Weak transcription	GM12878-XiMat	blood
4	chr5:41723000-41739200	Weak transcription	Aorta	Aorta

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