Variant report

Variant	rs56397397
Chromosome Location	chr6:38751160-38751161
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38745585..38748255-chr6:38749939..38751759,3	K562	blood:
2	chr6:38745585..38748402-chr6:38749939..38752656,4	K562	blood:
3	chr6:38749592..38751313-chr6:38753149..38755340,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12524938	0.87[ASN][1000 genomes]
rs12526772	0.87[ASN][1000 genomes]
rs12526788	0.87[ASN][1000 genomes]
rs12527204	0.87[ASN][1000 genomes]
rs12527876	0.87[ASN][1000 genomes]
rs12528676	0.87[ASN][1000 genomes]
rs1564376	0.87[ASN][1000 genomes]
rs2038199	0.87[ASN][1000 genomes]
rs2038200	0.87[ASN][1000 genomes]
rs2038201	0.87[ASN][1000 genomes]
rs2038202	0.87[ASN][1000 genomes]
rs2038203	0.87[ASN][1000 genomes]
rs2395705	0.87[ASN][1000 genomes]
rs3800357	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55891540	0.87[ASN][1000 genomes]
rs55918123	0.87[ASN][1000 genomes]
rs58350338	0.87[ASN][1000 genomes]
rs61748600	0.87[ASN][1000 genomes]
rs61748601	0.87[ASN][1000 genomes]
rs72849108	0.87[ASN][1000 genomes]
rs72849126	0.87[ASN][1000 genomes]
rs72849135	0.87[ASN][1000 genomes]
rs72849149	0.87[ASN][1000 genomes]
rs72849152	0.87[ASN][1000 genomes]
rs72849154	0.87[ASN][1000 genomes]
rs72849155	0.87[ASN][1000 genomes]
rs72849157	0.87[ASN][1000 genomes]
rs72849158	0.87[ASN][1000 genomes]
rs72849159	0.87[ASN][1000 genomes]
rs72849162	0.87[ASN][1000 genomes]
rs72849167	0.87[ASN][1000 genomes]
rs72849168	0.87[ASN][1000 genomes]
rs72849172	0.87[ASN][1000 genomes]
rs72849173	0.87[ASN][1000 genomes]
rs72849178	0.87[ASN][1000 genomes]
rs72849179	0.87[ASN][1000 genomes]
rs72849181	0.87[ASN][1000 genomes]
rs72849182	0.87[ASN][1000 genomes]
rs72849187	0.87[ASN][1000 genomes]
rs72849189	0.87[ASN][1000 genomes]
rs72849190	0.87[ASN][1000 genomes]
rs72849201	0.87[ASN][1000 genomes]
rs72849921	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849924	0.87[ASN][1000 genomes]
rs72849933	0.87[ASN][1000 genomes]
rs72849943	0.87[ASN][1000 genomes]
rs72849984	0.87[ASN][1000 genomes]
rs72851512	0.87[ASN][1000 genomes]
rs72851533	0.87[ASN][1000 genomes]
rs7749015	0.87[ASN][1000 genomes]
rs7773138	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv462915	chr6:38728142-38773293	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv602959	chr6:38728142-38786528	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv470814	chr6:38728142-38790149	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv462916	chr6:38747770-38782401	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv602960	chr6:38747770-38782401	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38750400-38751800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:38750800-38752600	Enhancers	Fetal Kidney	kidney
3	chr6:38751000-38751600	Enhancers	K562	blood

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