Variant report

Variant	rs56401731
Chromosome Location	chr6:144257552-144257553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs41285027	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144250600-144267800	Weak transcription	Fetal Brain Male	brain
2	chr6:144253200-144272600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:144254200-144257800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:144254400-144257600	Weak transcription	Fetal Lung	lung
5	chr6:144255200-144262600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:144255800-144262600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:144256200-144258200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:144256600-144262400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:144256600-144262600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:144256600-144284400	Weak transcription	Aorta	Aorta
11	chr6:144257200-144257800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:144257200-144257800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:144257400-144257600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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