Variant report

Variant	rs41285027
Chromosome Location	chr6:144144875-144144876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144141342..144143366-chr6:144143940..144146702,4	K562	blood:
2	chr6:144144566..144147146-chr6:144156205..144157723,2	MCF-7	breast:
3	chr6:144142472..144145009-chr6:144162968..144165817,2	K562	blood:
4	chr6:144144070..144146018-chr6:144148350..144151006,2	K562	blood:

Variant related genes	Relation type
ENSG00000135521	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1061690	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11963739	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11965439	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11966700	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11969396	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17523460	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17614442	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55688549	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55780510	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55911614	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55971519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56060230	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56401731	1.00[AFR][1000 genomes]
rs62427370	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144111600-144149000	Weak transcription	Right Ventricle	heart
2	chr6:144122200-144146800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:144122200-144147400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:144122200-144147600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:144122200-144147800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:144122200-144155000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:144122200-144163600	Weak transcription	Colonic Mucosa	Colon
8	chr6:144122200-144163600	Weak transcription	Fetal Kidney	kidney
9	chr6:144123600-144150000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:144125600-144163600	Weak transcription	Psoas Muscle	Psoas
11	chr6:144125800-144163600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:144128800-144163600	Weak transcription	HSMMtube	muscle
13	chr6:144129200-144146200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:144129200-144147200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:144129200-144150000	Weak transcription	Primary T cells from cord blood	blood
16	chr6:144129200-144152800	Weak transcription	Primary B cells from cord blood	blood
17	chr6:144129200-144159200	Weak transcription	HepG2	liver
18	chr6:144129200-144163600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:144129200-144163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:144129600-144163600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:144130000-144149600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:144130000-144150800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:144130200-144147200	Weak transcription	Stomach Mucosa	stomach
24	chr6:144130200-144150200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:144130200-144150800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:144130200-144163400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:144130200-144163800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:144130400-144146600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:144130400-144159800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:144133800-144149200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:144134000-144150400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:144134000-144156800	Weak transcription	Pancreas	Pancrea
33	chr6:144134000-144163800	Weak transcription	Aorta	Aorta
34	chr6:144134000-144163800	Weak transcription	Esophagus	oesophagus
35	chr6:144134000-144164000	Weak transcription	Gastric	stomach
36	chr6:144136600-144163600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:144137800-144145200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:144140800-144163400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:144141000-144146000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr6:144141000-144147600	Weak transcription	Fetal Lung	lung
41	chr6:144141200-144147400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:144141400-144151400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:144141600-144158800	Weak transcription	Fetal Intestine Large	intestine
44	chr6:144141800-144147400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:144141800-144152000	Weak transcription	Spleen	Spleen
46	chr6:144141800-144152400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:144142000-144149600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:144142200-144145400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:144142200-144149400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:144142200-144164000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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