Variant report

Variant	rs56403804
Chromosome Location	chr3:43368021-43368022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17405916	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17473118	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55836177	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55990908	0.83[AMR][1000 genomes]
rs56412846	0.81[AMR][1000 genomes]
rs73072912	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43332800-43377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43345000-43368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:43346000-43377000	Weak transcription	K562	blood
4	chr3:43348400-43378800	Weak transcription	Hela-S3	cervix
5	chr3:43351000-43375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:43353000-43374000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:43353400-43375200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:43354400-43369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:43359400-43374000	Weak transcription	Placenta	Placenta
10	chr3:43359400-43376600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:43359600-43371800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:43359600-43372000	Weak transcription	NHLF	lung
13	chr3:43359600-43372200	Weak transcription	HSMM	muscle
14	chr3:43359600-43375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:43359600-43376200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:43359800-43368400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:43359800-43369800	Weak transcription	NHEK	skin
18	chr3:43360200-43368600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:43360400-43375600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:43360400-43376200	Weak transcription	Brain Germinal Matrix	brain
21	chr3:43361200-43374600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:43361200-43377800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:43361400-43368200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:43362400-43368600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:43363600-43374000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:43364200-43371600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:43364800-43370600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr3:43365000-43370400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr3:43365200-43370400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:43365200-43371200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:43365200-43371200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr3:43365400-43368200	Enhancers	Left Ventricle	heart
33	chr3:43365400-43368600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:43365400-43369600	Enhancers	Primary B cells from peripheral blood	blood
35	chr3:43365400-43370200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr3:43365400-43370400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr3:43365400-43370400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr3:43365400-43373600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:43365600-43368200	Enhancers	Primary T cells fromperipheralblood	blood
40	chr3:43365600-43368200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:43365600-43369800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:43365600-43370200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr3:43365600-43370200	Enhancers	Primary hematopoietic stem cells	blood
44	chr3:43365600-43370600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:43365800-43370400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:43366000-43369800	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr3:43366200-43370400	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr3:43366200-43370600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:43366400-43368200	Enhancers	HepG2	liver
50	chr3:43366400-43368400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links