Variant report

Variant	rs55836177
Chromosome Location	chr3:43325094-43325095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:43325090-43325372	K562	blood:	n/a	chr3:43325234-43325245

Variant related genes	Relation type
SNRK	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1317402	0.85[EUR][1000 genomes]
rs1320160	0.84[EUR][1000 genomes]
rs1320161	0.84[EUR][1000 genomes]
rs1320162	0.84[EUR][1000 genomes]
rs1320163	0.84[EUR][1000 genomes]
rs17075328	0.81[EUR][1000 genomes]
rs17075415	0.85[EUR][1000 genomes]
rs17254504	0.84[EUR][1000 genomes]
rs17254786	0.84[EUR][1000 genomes]
rs17320570	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17405916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17473118	0.81[AMR][1000 genomes]
rs1996497	0.84[EUR][1000 genomes]
rs2372350	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2372351	0.84[EUR][1000 genomes]
rs2372360	0.83[EUR][1000 genomes]
rs2372361	0.84[EUR][1000 genomes]
rs4504148	0.84[EUR][1000 genomes]
rs55650554	0.84[EUR][1000 genomes]
rs55919553	0.84[EUR][1000 genomes]
rs55988644	0.84[EUR][1000 genomes]
rs55990908	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56032317	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56053383	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56291522	0.84[EUR][1000 genomes]
rs56403804	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56412846	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56745072	0.84[EUR][1000 genomes]
rs57757985	0.84[EUR][1000 genomes]
rs58504881	0.84[EUR][1000 genomes]
rs60971695	0.84[EUR][1000 genomes]
rs6766079	0.84[EUR][1000 genomes]
rs6767019	0.85[EUR][1000 genomes]
rs6791341	0.84[EUR][1000 genomes]
rs6791526	0.82[EUR][1000 genomes]
rs6796424	0.82[EUR][1000 genomes]
rs6801151	0.82[EUR][1000 genomes]
rs6805108	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6808396	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73072908	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73072912	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73072920	0.84[EUR][1000 genomes]
rs73086702	0.81[EUR][1000 genomes]
rs73088703	0.81[EUR][1000 genomes]
rs73088726	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73088732	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73088738	0.84[EUR][1000 genomes]
rs73088748	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73088757	0.84[EUR][1000 genomes]
rs73829200	0.84[EUR][1000 genomes]
rs7633546	0.84[EUR][1000 genomes]
rs7634209	0.81[EUR][1000 genomes]
rs7641590	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7646966	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43318800-43327800	Weak transcription	Small Intestine	intestine
2	chr3:43321600-43327000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:43324000-43327200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:43324400-43325200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:43324400-43325400	Enhancers	HUVEC	blood vessel
6	chr3:43325000-43325200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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