Variant report

Variant	rs73088732
Chromosome Location	chr3:43275405-43275406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1317402	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1320160	0.98[EUR][1000 genomes]
rs1320161	0.98[EUR][1000 genomes]
rs1320162	0.98[EUR][1000 genomes]
rs1320163	0.98[EUR][1000 genomes]
rs17075328	0.95[EUR][1000 genomes]
rs17075415	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17254504	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17254786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17320570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17405916	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1996497	0.98[EUR][1000 genomes]
rs2372350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2372351	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2372360	0.97[EUR][1000 genomes]
rs2372361	0.98[EUR][1000 genomes]
rs4504148	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55650554	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836177	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55919553	0.98[EUR][1000 genomes]
rs55988644	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55990908	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56032317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56053383	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56291522	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56412846	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56745072	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57757985	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58504881	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60971695	0.98[EUR][1000 genomes]
rs6766079	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767019	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6791341	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791526	0.96[EUR][1000 genomes]
rs6796424	0.96[EUR][1000 genomes]
rs6801151	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6805108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808396	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73072908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072912	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73072920	0.98[EUR][1000 genomes]
rs73086702	0.95[EUR][1000 genomes]
rs73088703	0.95[EUR][1000 genomes]
rs73088726	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73088738	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088748	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73088757	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829200	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7633546	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634209	0.95[EUR][1000 genomes]
rs7641590	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7646966	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43272800-43277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43273200-43276200	Weak transcription	HUVEC	blood vessel
3	chr3:43273200-43277200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:43273600-43276000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:43273600-43276000	Weak transcription	NHLF	lung
6	chr3:43273600-43277200	Weak transcription	NHEK	skin
7	chr3:43273600-43277400	Weak transcription	HMEC	breast
8	chr3:43273600-43277800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:43274000-43276200	Enhancers	Fetal Thymus	thymus
10	chr3:43274400-43276200	Enhancers	Thymus	Thymus
11	chr3:43274600-43275600	Enhancers	Fetal Muscle Leg	muscle
12	chr3:43275000-43275600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:43275200-43275600	Enhancers	Lung	lung
14	chr3:43275200-43275600	Enhancers	HSMMtube	muscle
15	chr3:43275200-43276600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:43275400-43275600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:43275400-43276000	Enhancers	Gastric	stomach
18	chr3:43275400-43276200	Enhancers	Pancreas	Pancrea

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