Variant report

Variant	rs56404375
Chromosome Location	chr16:73024359-73024360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73022944..73025430-chr16:73077446..73079033,2	MCF-7	breast:
2	chr16:73022117..73028240-chr16:73079651..73083166,6	MCF-7	breast:
3	chr16:73019871..73021578-chr16:73023673..73025782,2	MCF-7	breast:
4	chr16:73018202..73027072-chr16:73088249..73094904,11	MCF-7	breast:
5	chr16:73000834..73003389-chr16:73024010..73025519,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272250	Chromatin interaction
ENSG00000271009	Chromatin interaction
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11640395	0.94[ASN][1000 genomes]
rs16971465	0.96[ASN][1000 genomes]
rs2040507	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55810200	0.94[ASN][1000 genomes]
rs60758584	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73594707	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73594724	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9927735	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73015200-73026200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr16:73016800-73028000	Enhancers	Left Ventricle	heart
3	chr16:73017200-73025400	Weak transcription	Fetal Kidney	kidney
4	chr16:73017400-73024600	Enhancers	Pancreas	Pancrea
5	chr16:73019000-73027200	Enhancers	Lung	lung
6	chr16:73019000-73035200	Enhancers	Placenta	Placenta
7	chr16:73019400-73024800	Enhancers	Right Ventricle	heart
8	chr16:73019600-73025800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:73019800-73031800	Enhancers	Fetal Lung	lung
10	chr16:73020400-73024800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr16:73020600-73026000	Weak transcription	Ovary	ovary
12	chr16:73020800-73027800	Enhancers	Liver	Liver
13	chr16:73022000-73024800	Enhancers	Fetal Muscle Trunk	muscle
14	chr16:73022800-73027400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr16:73023000-73024600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr16:73023200-73024600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr16:73023200-73024600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr16:73023200-73024600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr16:73023200-73024600	Enhancers	Brain Substantia Nigra	brain
20	chr16:73023200-73024800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr16:73023200-73025400	Enhancers	Stomach Mucosa	stomach
22	chr16:73023200-73027800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr16:73023200-73034800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr16:73023400-73024400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr16:73023400-73024400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr16:73023400-73024400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr16:73023400-73024400	Enhancers	Fetal Heart	heart
28	chr16:73023400-73024400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr16:73023400-73024600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr16:73023400-73024600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr16:73023400-73024600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr16:73023400-73024600	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr16:73023400-73024600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr16:73023400-73024600	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr16:73023400-73024600	Enhancers	Spleen	Spleen
36	chr16:73023400-73024600	Flanking Active TSS	NH-A	brain
37	chr16:73023400-73024600	Flanking Active TSS	NHDF-Ad	bronchial
38	chr16:73023400-73024600	Flanking Active TSS	Osteobl	bone
39	chr16:73023400-73024800	Enhancers	Brain Germinal Matrix	brain
40	chr16:73023400-73024800	Enhancers	Gastric	stomach
41	chr16:73023400-73026600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr16:73023400-73026600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr16:73023400-73026600	Enhancers	Fetal Stomach	stomach
44	chr16:73023400-73028000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr16:73023400-73028800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr16:73023600-73024400	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr16:73023600-73024400	Enhancers	Fetal Intestine Large	intestine
48	chr16:73023600-73024400	Flanking Active TSS	A549	lung
49	chr16:73023600-73024400	Flanking Active TSS	HUVEC	blood vessel
50	chr16:73023600-73024600	Enhancers	HUES64 Cell Line	embryonic stem cell

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