The 2.0 version of rSNPBase

Variant report

Variant rs55810200
Chromosome Location chr16:73013842-73013843
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:72993400-73019600 Weak transcription Hela-S3 cervix
2 chr16:72993600-73019000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr16:72996200-73017800 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr16:72996800-73018800 Weak transcription NHLF lung
5 chr16:72997000-73017800 Weak transcription HSMMtube muscle
6 chr16:72998400-73018800 Weak transcription Osteobl bone
7 chr16:73001200-73019000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr16:73002200-73019000 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr16:73003000-73018000 Weak transcription Brain Substantia Nigra brain
10 chr16:73003200-73018800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr16:73003400-73017600 Weak transcription HSMM muscle
12 chr16:73003800-73019000 Weak transcription Brain Cingulate Gyrus brain
13 chr16:73005000-73019400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr16:73005600-73017600 Weak transcription Brain Anterior Caudate brain
15 chr16:73007000-73018400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr16:73007400-73017400 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr16:73007400-73019600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr16:73008600-73019000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr16:73008800-73023000 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr16:73009000-73017000 Weak transcription Brain Hippocampus Middle brain
21 chr16:73010800-73017800 Weak transcription Fetal Muscle Trunk muscle
22 chr16:73011000-73015400 Weak transcription Gastric stomach
23 chr16:73011200-73017800 Weak transcription Duodenum Mucosa Duodenum
24 chr16:73011200-73018000 Weak transcription Stomach Mucosa stomach
25 chr16:73011400-73016200 Weak transcription Aorta Aorta
26 chr16:73011400-73016600 Weak transcription Fetal Stomach stomach
27 chr16:73011400-73017800 Weak transcription Fetal Intestine Large intestine
28 chr16:73011400-73018800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr16:73011400-73019000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr16:73011600-73016200 Weak transcription Placenta Amnion Placenta Amnion
31 chr16:73011600-73019000 Weak transcription Fetal Heart heart
32 chr16:73012000-73019000 Enhancers Skeletal Muscle Female skeletal muscle
33 chr16:73012200-73015000 Enhancers Colon Smooth Muscle Colon
34 chr16:73012400-73015800 Enhancers HepG2 liver
35 chr16:73012400-73019000 Weak transcription Rectal Smooth Muscle rectum
36 chr16:73012600-73017600 Weak transcription Muscle Satellite Cultured Cells --
37 chr16:73012600-73017800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr16:73012600-73018600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr16:73012800-73014000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr16:73012800-73014000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr16:73012800-73014000 Weak transcription Fetal Lung lung
42 chr16:73012800-73016600 Weak transcription Placenta Placenta
43 chr16:73012800-73020000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr16:73012800-73020400 Weak transcription Fetal Intestine Small intestine
45 chr16:73012800-73023400 Weak transcription A549 lung
46 chr16:73013000-73015000 Weak transcription Psoas Muscle Psoas
47 chr16:73013000-73016800 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr16:73013000-73017600 Weak transcription Esophagus oesophagus
49 chr16:73013000-73018600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr16:73013200-73014000 Weak transcription Liver Liver

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Last update: Aug 31, 2015