Variant report

Variant	rs11075955
Chromosome Location	chr16:73015161-73015162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:73015146-73015165	HUVEC	blood vessel:	n/a	n/a
2	FOXA1	chr16:73015054-73015297	T-47D	breast:	n/a	chr16:73015226-73015241

No.	Distal block	Cell Line	Cell type
1	chr16:72995941..72997772-chr16:73013890..73016453,2	MCF-7	breast:
2	chr16:73002331..73005411-chr16:73011017..73015250,3	MCF-7	breast:
3	chr16:73009955..73011584-chr16:73014836..73017573,2	MCF-7	breast:
4	chr16:73013583..73015473-chr16:73077986..73080970,2	MCF-7	breast:
5	chr16:72987849..72990412-chr16:73015041..73018020,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221799	TF binding region

rs_ID	r²[population]
rs10153219	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10153220	1.00[ASN][1000 genomes]
rs11640395	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs11647245	0.81[EUR][1000 genomes]
rs12445917	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12445932	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55810200	0.89[EUR][1000 genomes]
rs56295898	1.00[ASN][1000 genomes]
rs56338549	1.00[ASN][1000 genomes]
rs62052381	1.00[ASN][1000 genomes]
rs72795156	1.00[ASN][1000 genomes]
rs72795159	1.00[ASN][1000 genomes]
rs72795160	1.00[ASN][1000 genomes]
rs73592761	1.00[ASN][1000 genomes]
rs8055596	1.00[ASN][1000 genomes]

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72993400-73019600	Weak transcription	Hela-S3	cervix
2	chr16:72993600-73019000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:72996200-73017800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr16:72996800-73018800	Weak transcription	NHLF	lung
5	chr16:72997000-73017800	Weak transcription	HSMMtube	muscle
6	chr16:72998400-73018800	Weak transcription	Osteobl	bone
7	chr16:73001200-73019000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:73002200-73019000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr16:73003000-73018000	Weak transcription	Brain Substantia Nigra	brain
10	chr16:73003200-73018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr16:73003400-73017600	Weak transcription	HSMM	muscle
12	chr16:73003800-73019000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr16:73005000-73019400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr16:73005600-73017600	Weak transcription	Brain Anterior Caudate	brain
15	chr16:73007000-73018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:73007400-73017400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr16:73007400-73019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:73008600-73019000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr16:73008800-73023000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr16:73009000-73017000	Weak transcription	Brain Hippocampus Middle	brain
21	chr16:73010800-73017800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr16:73011000-73015400	Weak transcription	Gastric	stomach
23	chr16:73011200-73017800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr16:73011200-73018000	Weak transcription	Stomach Mucosa	stomach
25	chr16:73011400-73016200	Weak transcription	Aorta	Aorta
26	chr16:73011400-73016600	Weak transcription	Fetal Stomach	stomach
27	chr16:73011400-73017800	Weak transcription	Fetal Intestine Large	intestine
28	chr16:73011400-73018800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr16:73011400-73019000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr16:73011600-73016200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr16:73011600-73019000	Weak transcription	Fetal Heart	heart
32	chr16:73012000-73019000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr16:73012400-73015800	Enhancers	HepG2	liver
34	chr16:73012400-73019000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr16:73012600-73017600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr16:73012600-73017800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr16:73012600-73018600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:73012800-73016600	Weak transcription	Placenta	Placenta
39	chr16:73012800-73020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr16:73012800-73020400	Weak transcription	Fetal Intestine Small	intestine
41	chr16:73012800-73023400	Weak transcription	A549	lung
42	chr16:73013000-73016800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr16:73013000-73017600	Weak transcription	Esophagus	oesophagus
44	chr16:73013000-73018600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr16:73013200-73016600	Weak transcription	Right Ventricle	heart
46	chr16:73013200-73017400	Weak transcription	Pancreas	Pancrea
47	chr16:73013200-73017600	Weak transcription	Right Atrium	heart
48	chr16:73013200-73017800	Weak transcription	Spleen	Spleen
49	chr16:73013200-73018800	Weak transcription	Adipose Nuclei	Adipose
50	chr16:73013200-73019000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links