Variant report

Variant	rs56295898
Chromosome Location	chr16:73117521-73117522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10153219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10153220	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11075955	1.00[ASN][1000 genomes]
rs12445917	1.00[ASN][1000 genomes]
rs12445932	1.00[ASN][1000 genomes]
rs56338549	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62052381	1.00[ASN][1000 genomes]
rs72795156	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72795159	1.00[ASN][1000 genomes]
rs72795160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795164	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73592761	1.00[ASN][1000 genomes]
rs8055596	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73110400-73125200	Weak transcription	Aorta	Aorta
2	chr16:73115800-73117800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr16:73116000-73118000	Enhancers	Hela-S3	cervix
4	chr16:73116200-73117800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:73116200-73118000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr16:73116600-73118000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr16:73116600-73118000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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