Variant report

Variant	rs72795164
Chromosome Location	chr16:73126750-73126751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:73049713..73052075-chr16:73126664..73128692,2	MCF-7	breast:
2	chr16:72960997..72962941-chr16:73126701..73128728,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-44L9.1.1-10	chr16:73126248-73126884	XLOC_011783
2	lnc-RP11-44L9.1.1-10	chr16:73126248-73126884	ENSG00000260880.2
3	lnc-RP11-44L9.1.1-10	chr16:73126248-73126884	NR_027756

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10153219	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10153220	0.84[AFR][1000 genomes]
rs56295898	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56338549	1.00[AFR][1000 genomes]
rs72795157	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72795160	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73125000-73127200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:73125200-73126800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr16:73125200-73127200	Enhancers	Brain Substantia Nigra	brain
4	chr16:73125200-73128200	Active TSS	Aorta	Aorta
5	chr16:73125400-73126800	Enhancers	Hela-S3	cervix
6	chr16:73125400-73129800	Weak transcription	Psoas Muscle	Psoas
7	chr16:73125400-73138000	Weak transcription	Right Atrium	heart
8	chr16:73125800-73126800	Enhancers	Primary T cells from cord blood	blood
9	chr16:73125800-73127400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr16:73125800-73128000	Enhancers	Brain Cingulate Gyrus	brain
11	chr16:73126000-73127000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr16:73126000-73127600	Enhancers	Brain Anterior Caudate	brain
13	chr16:73126000-73130000	Enhancers	HUVEC	blood vessel
14	chr16:73126200-73126800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr16:73126200-73126800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr16:73126200-73126800	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr16:73126200-73126800	Enhancers	Fetal Thymus	thymus
18	chr16:73126200-73127400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr16:73126200-73130800	Enhancers	Fetal Muscle Leg	muscle
20	chr16:73126400-73126800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr16:73126400-73127000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr16:73126400-73127000	Enhancers	HepG2	liver
23	chr16:73126400-73127200	Weak transcription	Brain Germinal Matrix	brain
24	chr16:73126400-73128000	Enhancers	Fetal Muscle Trunk	muscle
25	chr16:73126400-73128000	Enhancers	Placenta	Placenta
26	chr16:73126600-73126800	Enhancers	Adipose Nuclei	Adipose
27	chr16:73126600-73128400	Enhancers	NH-A	brain
28	chr16:73126600-73130000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr16:73126600-73130000	Weak transcription	Monocytes-CD14+_RO01746	blood

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