Variant report

Variant	rs56406888
Chromosome Location	chr14:69041337-69041338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69040226..69045730-chr14:69257652..69262741,8	MCF-7	breast:
2	chr14:69037050..69041400-chr14:69041759..69045325,4	MCF-7	breast:
3	chr14:68932415..68937640-chr14:69040451..69046051,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17829180	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58253081	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58592978	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69030800-69041600	Weak transcription	NHLF	lung
2	chr14:69031200-69041800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69032400-69041400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:69033200-69041600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:69033600-69041600	Weak transcription	Hela-S3	cervix
6	chr14:69036800-69041400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:69036800-69052000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:69037000-69041600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:69037000-69041600	Weak transcription	Psoas Muscle	Psoas
10	chr14:69037000-69041800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:69037000-69042000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:69037000-69052600	Weak transcription	Colonic Mucosa	Colon
13	chr14:69037200-69041600	Weak transcription	Ovary	ovary
14	chr14:69037200-69041600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:69037400-69041400	Weak transcription	Fetal Lung	lung
16	chr14:69037400-69041600	Weak transcription	Fetal Heart	heart
17	chr14:69037400-69041600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:69037400-69042800	Weak transcription	Gastric	stomach
19	chr14:69037400-69042800	Weak transcription	Right Ventricle	heart
20	chr14:69037400-69042800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr14:69037400-69054000	Weak transcription	Fetal Kidney	kidney
22	chr14:69037800-69041600	Weak transcription	HUVEC	blood vessel
23	chr14:69037800-69042800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:69038000-69042600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:69039200-69041400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:69039200-69044400	Weak transcription	Liver	Liver
27	chr14:69039400-69042800	Weak transcription	Pancreas	Pancrea
28	chr14:69039600-69041800	Enhancers	Primary T cells from cord blood	blood
29	chr14:69039600-69041800	Weak transcription	HepG2	liver
30	chr14:69039800-69041400	Weak transcription	Spleen	Spleen
31	chr14:69039800-69042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:69040000-69042000	Enhancers	Fetal Thymus	thymus
33	chr14:69040400-69043800	Enhancers	Lung	lung
34	chr14:69040600-69045600	Enhancers	Adipose Nuclei	Adipose
35	chr14:69040800-69041600	Weak transcription	A549	lung
36	chr14:69040800-69042800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:69041000-69041800	Enhancers	Brain Hippocampus Middle	brain
38	chr14:69041000-69041800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr14:69041000-69047800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr14:69041000-69048200	Enhancers	Placenta	Placenta
41	chr14:69041200-69041800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr14:69041200-69042000	Enhancers	Brain Anterior Caudate	brain
43	chr14:69041200-69042200	Enhancers	Small Intestine	intestine
44	chr14:69041200-69042800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:69041200-69043200	Enhancers	Fetal Muscle Leg	muscle
46	chr14:69041200-69045200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:69041200-69048200	Enhancers	HSMMtube	muscle

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