Variant report

Variant	rs58592978
Chromosome Location	chr14:69045382-69045383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68924227..68926055-chr14:69043237..69046222,3	MCF-7	breast:
2	chr14:69040226..69045730-chr14:69257652..69262741,8	MCF-7	breast:
3	chr14:69042594..69046267-chr14:69258129..69261368,4	MCF-7	breast:
4	chr14:69043815..69046176-chr14:69072899..69075411,2	MCF-7	breast:
5	chr14:69043397..69045562-chr14:69085788..69088006,2	MCF-7	breast:
6	chr14:68932415..68937640-chr14:69040451..69046051,7	MCF-7	breast:
7	chr14:68924906..68927378-chr14:69044527..69046149,2	MCF-7	breast:
8	chr14:69043850..69046166-chr14:69253123..69255175,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17829180	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56406888	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58253081	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69036800-69052000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:69037000-69052600	Weak transcription	Colonic Mucosa	Colon
3	chr14:69037400-69054000	Weak transcription	Fetal Kidney	kidney
4	chr14:69040600-69045600	Enhancers	Adipose Nuclei	Adipose
5	chr14:69041000-69047800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:69041000-69048200	Enhancers	Placenta	Placenta
7	chr14:69041200-69048200	Enhancers	HSMMtube	muscle
8	chr14:69041400-69045400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:69041400-69045600	Enhancers	Osteobl	bone
10	chr14:69041400-69045800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr14:69041400-69046400	Enhancers	NHDF-Ad	bronchial
12	chr14:69041400-69047200	Enhancers	HSMM	muscle
13	chr14:69041400-69047600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:69041400-69048000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:69041600-69045800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:69041600-69045800	Enhancers	HMEC	breast
17	chr14:69041600-69046000	Enhancers	HUVEC	blood vessel
18	chr14:69041600-69046400	Enhancers	NHLF	lung
19	chr14:69041800-69046000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:69041800-69046000	Enhancers	HepG2	liver
21	chr14:69042000-69045800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:69042000-69045800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:69042000-69046000	Weak transcription	Fetal Thymus	thymus
24	chr14:69042000-69050400	Weak transcription	Ovary	ovary
25	chr14:69042000-69052000	Weak transcription	Brain Anterior Caudate	brain
26	chr14:69042200-69047000	Weak transcription	Small Intestine	intestine
27	chr14:69042200-69053800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:69042400-69045600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:69042400-69046400	Weak transcription	Fetal Stomach	stomach
30	chr14:69042800-69045400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:69042800-69045600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:69042800-69045800	Enhancers	Left Ventricle	heart
33	chr14:69043000-69046400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr14:69043000-69046600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:69043200-69045600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:69043200-69046200	Enhancers	Fetal Heart	heart
37	chr14:69043400-69045400	Enhancers	Duodenum Mucosa	Duodenum
38	chr14:69043400-69045800	Enhancers	Right Atrium	heart
39	chr14:69043400-69046000	Enhancers	A549	lung
40	chr14:69043400-69047200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:69043400-69047400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:69043600-69045400	Enhancers	Fetal Intestine Large	intestine
43	chr14:69043600-69048200	Enhancers	Fetal Muscle Leg	muscle
44	chr14:69043600-69050200	Weak transcription	Psoas Muscle	Psoas
45	chr14:69043800-69045400	Weak transcription	Spleen	Spleen
46	chr14:69043800-69047400	Weak transcription	Colon Smooth Muscle	Colon
47	chr14:69044000-69046000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr14:69044000-69047000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:69044400-69045800	Enhancers	NHEK	skin
50	chr14:69044400-69046600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links