Variant report

Variant	rs564086829
Chromosome Location	chr6:150263961-150263962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150263150..150264777-chr6:150325600..150328449,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv969456	chr6:150263659-150269861	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150261400-150264000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150262400-150264000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:150262400-150264000	Bivalent/Poised TSS	Fetal Brain Female	brain
4	chr6:150262400-150264000	Active TSS	NHLF	lung
5	chr6:150262600-150264000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:150262600-150264000	Active TSS	Muscle Satellite Cultured Cells	--
7	chr6:150262800-150264000	Active TSS	NH-A	brain
8	chr6:150262800-150264000	Active TSS	NHDF-Ad	bronchial
9	chr6:150263200-150264000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:150263200-150264000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:150263200-150264000	Flanking Active TSS	HMEC	breast
12	chr6:150263400-150264000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:150263400-150264000	Bivalent Enhancer	Fetal Brain Male	brain
14	chr6:150263600-150264000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150263600-150264000	Enhancers	Esophagus	oesophagus
16	chr6:150263600-150264000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:150263600-150264200	Flanking Active TSS	Dnd41	blood
18	chr6:150263600-150267800	Weak transcription	Lung	lung
19	chr6:150263800-150264000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:150263800-150264000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:150263800-150264000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:150263800-150264000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:150263800-150264000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr6:150263800-150264000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:150263800-150264000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:150263800-150264000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:150263800-150264000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
28	chr6:150263800-150264000	Flanking Active TSS	Osteobl	bone
29	chr6:150263800-150264200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:150263800-150264200	Active TSS	HSMM	muscle
31	chr6:150263800-150269600	Weak transcription	HSMMtube	muscle
32	chr6:150263800-150271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:150263800-150271600	Weak transcription	NHEK	skin

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