Variant report

Variant	rs56412569
Chromosome Location	chr15:93168150-93168151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:93167645-93168190	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr15:93167861-93168838	GM12878	blood:	n/a	n/a
3	CTCF	chr15:93168080-93168230	HCPEpiC	choroid plexus:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:93164409..93168199-chr15:93168306..93170626,4	K562	blood:
2	chr15:93160189..93163896-chr15:93165743..93168738,4	MCF-7	breast:
3	chr15:93154756..93169106-chr15:93177301..93183879,27	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259064	TF binding region
ENSG00000185442	Chromatin interaction
ENSG00000259064	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17522085	1.00[ASN][1000 genomes]
rs56398031	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62021052	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:93156600-93168400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:93158600-93169800	Weak transcription	Primary T cells from cord blood	blood
4	chr15:93160200-93172800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:93160800-93168600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:93161200-93170200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:93161200-93170400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:93161200-93173000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:93161400-93178000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:93161800-93172600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:93162400-93172000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:93162600-93168600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:93163200-93168600	Weak transcription	A549	lung
14	chr15:93163600-93180600	Weak transcription	Small Intestine	intestine
15	chr15:93164000-93172200	Weak transcription	Ovary	ovary
16	chr15:93165400-93168200	Enhancers	Pancreas	Pancrea
17	chr15:93166000-93168800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr15:93166000-93169200	Enhancers	Right Ventricle	heart
19	chr15:93166000-93169400	Enhancers	Fetal Muscle Leg	muscle
20	chr15:93166000-93169600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:93166400-93168200	Enhancers	Left Ventricle	heart
22	chr15:93166400-93168200	Enhancers	Psoas Muscle	Psoas
23	chr15:93166400-93168800	Weak transcription	Fetal Kidney	kidney
24	chr15:93166400-93169200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:93166400-93169200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:93166400-93169200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:93166400-93169800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:93166600-93168600	Enhancers	Gastric	stomach
29	chr15:93166600-93169400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:93166800-93168200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:93166800-93168200	Enhancers	Esophagus	oesophagus
32	chr15:93166800-93168600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:93166800-93168800	Enhancers	Fetal Brain Female	brain
34	chr15:93166800-93168800	Enhancers	Fetal Intestine Large	intestine
35	chr15:93166800-93169200	Enhancers	Brain Angular Gyrus	brain
36	chr15:93166800-93169200	Enhancers	Brain Substantia Nigra	brain
37	chr15:93166800-93169200	Enhancers	Colon Smooth Muscle	Colon
38	chr15:93166800-93170400	Enhancers	HUVEC	blood vessel
39	chr15:93167000-93168200	Enhancers	Fetal Brain Male	brain
40	chr15:93167000-93169000	Enhancers	Stomach Mucosa	stomach
41	chr15:93167000-93169200	Enhancers	Rectal Smooth Muscle	rectum
42	chr15:93167000-93169400	Enhancers	Fetal Lung	lung
43	chr15:93167000-93177400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:93167200-93168200	Enhancers	Lung	lung
45	chr15:93167200-93168200	Flanking Active TSS	HSMM	muscle
46	chr15:93167200-93168800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:93167200-93169000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr15:93167200-93169200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr15:93167200-93169200	Enhancers	Right Atrium	heart
50	chr15:93167200-93169400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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