Variant report

Variant	rs62021052
Chromosome Location	chr15:93014231-93014232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17522085	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398031	1.00[ASN][1000 genomes]
rs56412569	1.00[ASN][1000 genomes]
rs62020974	1.00[ASN][1000 genomes]
rs62021048	1.00[ASN][1000 genomes]
rs62021050	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169995	1.00[ASN][1000 genomes]
rs7170164	1.00[ASN][1000 genomes]
rs74030522	1.00[ASN][1000 genomes]
rs8029064	1.00[ASN][1000 genomes]
rs8032091	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	nsv519402	chr15:93013560-93015427	Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93001400-93015800	Weak transcription	Fetal Brain Male	brain
2	chr15:93008400-93014400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:93010200-93015000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:93011200-93016600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:93011200-93017200	Weak transcription	Fetal Stomach	stomach
6	chr15:93011600-93018000	Weak transcription	HSMMtube	muscle
7	chr15:93011800-93015000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:93011800-93015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:93012800-93015800	Weak transcription	Spleen	Spleen
10	chr15:93012800-93020800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:93013000-93016400	Weak transcription	Brain Germinal Matrix	brain
12	chr15:93013200-93017200	Weak transcription	Fetal Brain Female	brain
13	chr15:93013800-93014600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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