Variant report

Variant	rs62021050
Chromosome Location	chr15:93006888-93006889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93005244..93007903-chr15:93187258..93190010,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17522085	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398031	1.00[ASN][1000 genomes]
rs62020974	1.00[ASN][1000 genomes]
rs62021048	1.00[ASN][1000 genomes]
rs62021052	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169995	1.00[ASN][1000 genomes]
rs7170164	1.00[ASN][1000 genomes]
rs74030522	1.00[ASN][1000 genomes]
rs8029064	1.00[ASN][1000 genomes]
rs8032091	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92972000-93011800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:92972800-93011400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:92973400-93012200	Strong transcription	Brain Germinal Matrix	brain
4	chr15:92973600-93008800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:92973600-93011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:92982400-93011800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:92991800-93007400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:92995000-93007400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:92995600-93007000	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:92997400-93011400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:93000800-93013200	Strong transcription	Fetal Brain Female	brain
12	chr15:93001400-93015800	Weak transcription	Fetal Brain Male	brain
13	chr15:93003600-93007800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:93005400-93008200	Enhancers	NHDF-Ad	bronchial
15	chr15:93005800-93010200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:93006000-93007600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:93006000-93007600	Enhancers	NH-A	brain
18	chr15:93006200-93007000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:93006200-93008200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:93006400-93007000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:93006400-93007200	Enhancers	HSMMtube	muscle
22	chr15:93006400-93007600	Enhancers	HSMM	muscle
23	chr15:93006600-93007200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:93006600-93007400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:93006600-93007600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:93006800-93007200	Weak transcription	Fetal Stomach	stomach

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